SILENT_MODE BLOCK_FILE jp_BJ0n1c5.concise.blc MAX_NSEQ 304 MAX_INPUT_LEN 306 OUTPUT_FILE jp_BJ0n1c5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 270 293 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 294 270 303 H SPACE SUB_CHARS 1 294 270 303 E SPACE SUB_CHARS 1 294 270 303 - SPACE STRAND 57 297 60 COLOUR_TEXT_REGION 57 297 60 297 51 STRAND 67 297 72 COLOUR_TEXT_REGION 67 297 72 297 51 STRAND 80 297 83 COLOUR_TEXT_REGION 80 297 83 297 51 STRAND 88 297 95 COLOUR_TEXT_REGION 88 297 95 297 51 STRAND 97 297 99 COLOUR_TEXT_REGION 97 297 99 297 51 STRAND 134 297 141 COLOUR_TEXT_REGION 134 297 141 297 51 STRAND 147 297 154 COLOUR_TEXT_REGION 147 297 154 297 51 STRAND 166 297 175 COLOUR_TEXT_REGION 166 297 175 297 51 STRAND 180 297 192 COLOUR_TEXT_REGION 180 297 192 297 51 STRAND 197 297 202 COLOUR_TEXT_REGION 197 297 202 297 51 STRAND 209 297 211 COLOUR_TEXT_REGION 209 297 211 297 51 HELIX 4 297 16 COLOUR_TEXT_REGION 4 297 16 297 50 HELIX 23 297 33 COLOUR_TEXT_REGION 23 297 33 297 50 HELIX 39 297 53 COLOUR_TEXT_REGION 39 297 53 297 50 HELIX 112 297 129 COLOUR_TEXT_REGION 112 297 129 297 50 HELIX 218 297 242 COLOUR_TEXT_REGION 218 297 242 297 50 HELIX 246 297 254 COLOUR_TEXT_REGION 246 297 254 297 50 STRAND 57 302 60 COLOUR_TEXT_REGION 57 302 60 302 51 STRAND 67 302 71 COLOUR_TEXT_REGION 67 302 71 302 51 STRAND 81 302 83 COLOUR_TEXT_REGION 81 302 83 302 51 STRAND 88 302 95 COLOUR_TEXT_REGION 88 302 95 302 51 STRAND 98 302 99 COLOUR_TEXT_REGION 98 302 99 302 51 STRAND 135 302 141 COLOUR_TEXT_REGION 135 302 141 302 51 STRAND 147 302 154 COLOUR_TEXT_REGION 147 302 154 302 51 STRAND 166 302 175 COLOUR_TEXT_REGION 166 302 175 302 51 STRAND 180 302 192 COLOUR_TEXT_REGION 180 302 192 302 51 STRAND 198 302 202 COLOUR_TEXT_REGION 198 302 202 302 51 STRAND 209 302 211 COLOUR_TEXT_REGION 209 302 211 302 51 STRAND 262 302 262 COLOUR_TEXT_REGION 262 302 262 302 51 STRAND 264 302 264 COLOUR_TEXT_REGION 264 302 264 302 51 HELIX 4 302 16 COLOUR_TEXT_REGION 4 302 16 302 50 HELIX 23 302 33 COLOUR_TEXT_REGION 23 302 33 302 50 HELIX 39 302 54 COLOUR_TEXT_REGION 39 302 54 302 50 HELIX 112 302 128 COLOUR_TEXT_REGION 112 302 128 302 50 HELIX 218 302 243 COLOUR_TEXT_REGION 218 302 243 302 50 HELIX 246 302 254 COLOUR_TEXT_REGION 246 302 254 302 50 STRAND 58 303 60 COLOUR_TEXT_REGION 58 303 60 303 51 STRAND 67 303 73 COLOUR_TEXT_REGION 67 303 73 303 51 STRAND 80 303 83 COLOUR_TEXT_REGION 80 303 83 303 51 STRAND 88 303 95 COLOUR_TEXT_REGION 88 303 95 303 51 STRAND 97 303 99 COLOUR_TEXT_REGION 97 303 99 303 51 STRAND 134 303 140 COLOUR_TEXT_REGION 134 303 140 303 51 STRAND 147 303 154 COLOUR_TEXT_REGION 147 303 154 303 51 STRAND 166 303 175 COLOUR_TEXT_REGION 166 303 175 303 51 STRAND 180 303 192 COLOUR_TEXT_REGION 180 303 192 303 51 STRAND 197 303 202 COLOUR_TEXT_REGION 197 303 202 303 51 STRAND 209 303 210 COLOUR_TEXT_REGION 209 303 210 303 51 HELIX 4 303 16 COLOUR_TEXT_REGION 4 303 16 303 50 HELIX 22 303 33 COLOUR_TEXT_REGION 22 303 33 303 50 HELIX 40 303 53 COLOUR_TEXT_REGION 40 303 53 303 50 HELIX 112 303 129 COLOUR_TEXT_REGION 112 303 129 303 50 HELIX 218 303 242 COLOUR_TEXT_REGION 218 303 242 303 50 HELIX 246 303 255 COLOUR_TEXT_REGION 246 303 255 303 50