SILENT_MODE
BLOCK_FILE jp_nM9qjxc.concise.blc
MAX_NSEQ 262
MAX_INPUT_LEN 264
OUTPUT_FILE jp_nM9qjxc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 251   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 252 144 261 H SPACE
SUB_CHARS 1 252 144 261 E SPACE
SUB_CHARS 1 252 144 261 - SPACE
STRAND 3 255 3
COLOUR_TEXT_REGION 3 255 3 255 51
STRAND 12 255 15
COLOUR_TEXT_REGION 12 255 15 255 51
STRAND 76 255 81
COLOUR_TEXT_REGION 76 255 81 255 51
STRAND 128 255 131
COLOUR_TEXT_REGION 128 255 131 255 51
STRAND 135 255 136
COLOUR_TEXT_REGION 135 255 136 255 51
HELIX 32 255 42
COLOUR_TEXT_REGION 32 255 42 255 50
HELIX 50 255 59
COLOUR_TEXT_REGION 50 255 59 255 50
HELIX 82 255 99
COLOUR_TEXT_REGION 82 255 99 255 50
HELIX 110 255 123
COLOUR_TEXT_REGION 110 255 123 255 50
STRAND 3 260 3
COLOUR_TEXT_REGION 3 260 3 260 51
STRAND 12 260 15
COLOUR_TEXT_REGION 12 260 15 260 51
STRAND 76 260 80
COLOUR_TEXT_REGION 76 260 80 260 51
STRAND 128 260 132
COLOUR_TEXT_REGION 128 260 132 260 51
STRAND 135 260 136
COLOUR_TEXT_REGION 135 260 136 260 51
HELIX 32 260 42
COLOUR_TEXT_REGION 32 260 42 260 50
HELIX 45 260 47
COLOUR_TEXT_REGION 45 260 47 260 50
HELIX 50 260 60
COLOUR_TEXT_REGION 50 260 60 260 50
HELIX 81 260 99
COLOUR_TEXT_REGION 81 260 99 260 50
HELIX 110 260 123
COLOUR_TEXT_REGION 110 260 123 260 50
STRAND 3 261 3
COLOUR_TEXT_REGION 3 261 3 261 51
STRAND 13 261 14
COLOUR_TEXT_REGION 13 261 14 261 51
STRAND 77 261 82
COLOUR_TEXT_REGION 77 261 82 261 51
STRAND 135 261 136
COLOUR_TEXT_REGION 135 261 136 261 51
HELIX 34 261 41
COLOUR_TEXT_REGION 34 261 41 261 50
HELIX 83 261 99
COLOUR_TEXT_REGION 83 261 99 261 50
HELIX 110 261 123
COLOUR_TEXT_REGION 110 261 123 261 50