SILENT_MODE
BLOCK_FILE jp_wEpfY7G.concise.blc
MAX_NSEQ 126
MAX_INPUT_LEN 128
OUTPUT_FILE jp_wEpfY7G.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 105 115   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 116 105 125 H SPACE
SUB_CHARS 1 116 105 125 E SPACE
SUB_CHARS 1 116 105 125 - SPACE
HELIX 4 119 15
COLOUR_TEXT_REGION 4 119 15 119 50
HELIX 22 119 34
COLOUR_TEXT_REGION 22 119 34 119 50
HELIX 41 119 53
COLOUR_TEXT_REGION 41 119 53 119 50
HELIX 57 119 70
COLOUR_TEXT_REGION 57 119 70 119 50
HELIX 77 119 91
COLOUR_TEXT_REGION 77 119 91 119 50
HELIX 4 124 15
COLOUR_TEXT_REGION 4 124 15 124 50
HELIX 22 124 34
COLOUR_TEXT_REGION 22 124 34 124 50
HELIX 41 124 53
COLOUR_TEXT_REGION 41 124 53 124 50
HELIX 57 124 68
COLOUR_TEXT_REGION 57 124 68 124 50
HELIX 77 124 91
COLOUR_TEXT_REGION 77 124 91 124 50
HELIX 97 124 99
COLOUR_TEXT_REGION 97 124 99 124 50
HELIX 4 125 15
COLOUR_TEXT_REGION 4 125 15 125 50
HELIX 22 125 34
COLOUR_TEXT_REGION 22 125 34 125 50
HELIX 41 125 53
COLOUR_TEXT_REGION 41 125 53 125 50
HELIX 58 125 70
COLOUR_TEXT_REGION 58 125 70 125 50
HELIX 77 125 92
COLOUR_TEXT_REGION 77 125 92 125 50