QUERY : APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR : QUERY
UniRef90_UPI0003336CD9 : SPDFHDKFGNSILASGVAFCFASWVFVCTQIGIEWNLSPVGRVTPKEWR : UniRef90_UPI0003336CD9
UniRef90_UPI0002741492 : SPDFHDKYGNIVLAGGTTFCVVAWVYTVTQIGIMWNLSPVGRVTPKEWK : UniRef90_UPI0002741492
UniRef90_F6RVT0 : -PDFHDKYGTVILLGGAIFCASAWGYTVTQIGIEWNLSPVGRVTPKEWR : UniRef90_F6RVT0
UniRef90_UPI00042ABA37 : SSDFHDKYGNMMLISGATFCLLGYMIYMTQMGVEWNLSPVGRVTPKEWK : UniRef90_UPI00042ABA37
UniRef90_UPI0003C8CF20 : TPDFHDKYGSAVLARGATFCVAVWTYTATQIGIAWHLSPVGRVTPKE-- : UniRef90_UPI0003C8CF20
UniRef90_UPI0004442813 : APDFHDKYGNIILLSGTTFCVATWFYTITQIGVQWNLSPVGRVTPREW- : UniRef90_UPI0004442813
UniRef90_UPI0003F17F14 : SPDFHDKYGNAILASGVAFCFCSGIYLVTQTGIQWNLSPVGRVIPKEWR : UniRef90_UPI0003F17F14
UniRef90_UPI0003BBB97E : TPDFHDKDGNAILASGATVCVATWTYTGTHIGIEWDLSPVGRVNPKEWR : UniRef90_UPI0003BBB97E
UniRef90_G1Q9C8 : --DFHDKYGNTVLGSGATFCVATWTCTATRTGIEWNLSPVGRITPKEWR : UniRef90_G1Q9C8
UniRef90_UPI0002C42F72 : SLDFHDKYGNAVLASRVTFCFVAWVFVITQLGLEWNLSPVRRVTPKEWR : UniRef90_UPI0002C42F72
UniRef90_F7FZ47 : -PNFHDKYGTPILLSGATFCLAIWAYAATQIGIEWNPSPVGRIAPKDWR : UniRef90_F7FZ47
UniRef90_UPI00018B5151 : SPDFHDKYGDIILAGGTAFCVVVWVFTATQVGIKWNPSPVGRTTPKEW- : UniRef90_UPI00018B5151
UniRef90_H3AVG1 : -PDFHDKYGNVVLASGIVFCTVVWSYVATQTGIVWNFSPVGRVTPKEWR : UniRef90_H3AVG1
UniRef90_K7FPA1 : -PDFHDKYGNMVLLGGTLFCVSIWGYVVTQTGIEWNLSPVGKVTPKEWR : UniRef90_K7FPA1
UniRef90_UPI00046B2674 : SPDFHDKYSNAELASGATFCIAVWTYIATQIGIEWNLAPVGRVTPKEWK : UniRef90_UPI00046B2674
UniRef90_UPI00032B2773 : SLDFHEKYGNAVLASGAAFCVVTWGFLTTQMGIEWNLSPVGRVTPMQW- : UniRef90_UPI00032B2773
UniRef90_UPI000333DBC0 : TPDFQDKYGNAILVGGAVFCIAAWTYPATEIGIGWNLSPVGRITPKEWR : UniRef90_UPI000333DBC0
UniRef90_UPI0001D36BAE : TPDFYDKYDNAVLASEATFCMALWTYRATQIRIERNLSSVGRITPKEWR : UniRef90_UPI0001D36BAE
UniRef90_UPI0002C562D3 : TPDFHYKYGNTVLASGATFCVALCAYAATQTGIECILSPAGSITPKEWR : UniRef90_UPI0002C562D3
UniRef90_H0VBK6 : SSNFHDKYGSTVLAGGTIFCAATWVFLTTQMGIVWNPSPVGRVTPKEWK : UniRef90_H0VBK6
UniRef90_UPI0001D54ED2 : TSDFHDKGGNAVLANGDTFCIAVWTYVATQIGIIGNLSPVGRVTLKEWR : UniRef90_UPI0001D54ED2
UniRef90_UPI00046BD1E1 : SPDFHDKXDNAVLASGTTFSVGAWIFKTTQIRIEWNLSPVGRVTPKEW- : UniRef90_UPI00046BD1E1
UniRef90_UPI000154F73E : SSNFHDKYGNMMLFSGSAFCLGAYIIFMTQMGVEWNLSPVGRVTPKEW- : UniRef90_UPI000154F73E
UniRef90_Q0VFB5 : -PDFHDRYGNIILLSGAVFCSAIWSYVITQTGIAWNLSPVGKITPKEWK : UniRef90_Q0VFB5
UniRef90_UPI00038C4F1E : -PDVHDKYGNAVLACGAIFCIAVWTYPATRTGRERDLSSVGRVTPKEWR : UniRef90_UPI00038C4F1E
UniRef90_Q9D2H1 : SEETHDKYGNMMLISGTIFCLAGYTIYMTQMGVEWNLSPIGRVTPQEWK : UniRef90_Q9D2H1
UniRef90_K4FSN8 : -PDFHDKYGTVILLAGTTFCVGIWSFVSTQTGITWNFSPVGKVTPQEWR : UniRef90_K4FSN8
UniRef90_H2MG42 : --NFHAKYGMGVLVSGTVFCTAVWAYVLTQTGIAWNLSPVGKVMPKEWR : UniRef90_H2MG42
UniRef90_UPI00032AE742 : TPDFYDKCNN-VLAGGATFCIVVWTYTATQIGIKRNLSLVGRVTSKEWR : UniRef90_UPI00032AE742
UniRef90_Q3SZX1 : SPDFHDKYGDILLASGTSFCLVTWVFLVTQIGIQWGCSPVGRVTPQEW- : UniRef90_Q3SZX1
UniRef90_S7MDZ0 : TPDFHEEYGSVTLAGGAPLCVATWTYTATQIGIEWNLSPVVRVNPKEW- : UniRef90_S7MDZ0
UniRef90_UPI0001CE2957 : TLDFHDKYGNVVLTDGATFCVAAWTYIATQLGIEWDLSLVGKVIPKE-- : UniRef90_UPI0001CE2957
UniRef90_UPI000332F4E7 : --DFHDKYGNAVLTSGFFFCVVTFGFYITQMGVKWNLSPVGRVTPKRW- : UniRef90_UPI000332F4E7
UniRef90_UPI000443AE07 : TPDFHDKYGNTVLASGA----------ATQIGVEWNLSPVGRVTTKEWR : UniRef90_UPI000443AE07
UniRef90_UPI00022F69D9 : -SDFHDKYGNIVLIGGCSFCFVGYLFYITQMGVEWNLSPVGRITPIEW- : UniRef90_UPI00022F69D9
UniRef90_U3F8N8 : -PDFHDKYGNLILLSGVAFGIGTWTYACLQLPLVWNFSPVGRLTPKEWR : UniRef90_U3F8N8
UniRef90_C1BJQ1 : --NFHMKYGNGLIVGGAAFCVAVWSFVLTQTGITWNLSPVGKLQPKPWR : UniRef90_C1BJQ1
UniRef90_UPI0003ADD0D4 : TPDFHDTYGKAVLAKETIFCVA---YTATQTGIEGDLSPVGRVTPKEWR : UniRef90_UPI0003ADD0D4
UniRef90_Q4SPX5 : --DFHSKYGTGIMIGGAVFCTAIWSYVMTQTGITWNLSPIRKVMPKEWR : UniRef90_Q4SPX5
UniRef90_UPI0003F16C43 : SPDFHDKYGNTMLASKTTFCF-VSILVITQIGIEWNLS-FGRVIPKE-- : UniRef90_UPI0003F16C43
UniRef90_UPI0002233C72 : APDFHDNM--VMLVELLTVYVAVWTHTATQTGTEWNLSPVGRVTPKEWR : UniRef90_UPI0002233C72
UniRef90_UPI000331847C : ---FHDRYGNVLLVSGSAFCLVTWWFVLTQSGVNLNLSPVGRVTPKEW- : UniRef90_UPI000331847C
UniRef90_UPI00038C617B : SPDFRDKHGITVLASGTTFCLVAWVFLTTQMEIEWNPSPVGRITPK--- : UniRef90_UPI00038C617B
UniRef90_G3VQF4 : -PNFHDKHSTPILLNGATFCLVTWAYATTQIGIGWNLSPFGRVMPK--- : UniRef90_G3VQF4
UniRef90_UPI000273A8E3 : -SDFDGKYGLPVFVGGSLFCIGTWVYTLKQYDLEHYVSPVGRVRPKSWK : UniRef90_UPI000273A8E3
UniRef90_UPI00035964EC : APNFHDKYGNAILAGGALFCISTWTYVSTNI------------------ : UniRef90_UPI00035964EC
UniRef90_G1Q9V8 : SPDFHDKYGDTILASGSIFCVVAWLFTATQVGIVWNLSPVGRVTPKEW- : UniRef90_G1Q9V8
UniRef90_UPI000359DCA0 : ------------------FRIAVWTHTATQTGKEWNLPPVGRVILKD-- : UniRef90_UPI000359DCA0
UniRef90_C1BXC8 : AADFHSKYGTGLLVGGFAFCTAVWAFVITQTGITWNLSPVGKVQPKPWR : UniRef90_C1BXC8
UniRef90_V8NEZ9 : -PDFHDKYGNLILLSGVAFGIGTWAY----------------------- : UniRef90_V8NEZ9
UniRef90_F1NL83 : -PNFHDKYGNLVLIGGAAVFATVWGYVFTKSGMEWGLSPVGRVTPKEWR : UniRef90_F1NL83
UniRef90_E3TEQ5 : SREFHAKYGMPLLIGGAAFCISIWSYVITSTGIAWNLSPVGKVQPKEW- : UniRef90_E3TEQ5
: 1---------11--------21--------31--------41------- :
OrigSeq : APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR : OrigSeq
Jnet : ----------EEEE--HHHHHHHHHHHHH------------EEE----- : Jnet
jhmm : ----------EEEE--HHHHHHHHHHHHHH---EE------EEE----- : jhmm
jpssm : ----------EEEE--HHHHHHHHHHHHH------------EE------ : jpssm
Lupas 14 : ------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------- : Lupas 28
Jnet_25 : ---B---BBBBBBBBBB-BBBBBB-BBBB-B-B-B-BBBBB-B-B--B- : Jnet_25
Jnet_5 : -----------BBB----BB-BBB-B-B----B------B--B------ : Jnet_5
Jnet_0 : ------------------------------------------------- : Jnet_0
Jnet Rel : 9984346874476342134444555554016761167776233167899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.