SILENT_MODE
BLOCK_FILE jp_o5Mden4.concise.blc
MAX_NSEQ 52
MAX_INPUT_LEN 54
OUTPUT_FILE jp_o5Mden4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 46 41   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 42 46 51 H SPACE
SUB_CHARS 1 42 46 51 E SPACE
SUB_CHARS 1 42 46 51 - SPACE
STRAND 37 45 42
COLOUR_TEXT_REGION 37 45 42 45 51
HELIX 17 45 31
COLOUR_TEXT_REGION 17 45 31 45 50
HELIX 36 45 36
COLOUR_TEXT_REGION 36 45 36 45 50
HELIX 43 45 43
COLOUR_TEXT_REGION 43 45 43 45 50
STRAND 37 50 43
COLOUR_TEXT_REGION 37 50 43 50 51
HELIX 17 50 31
COLOUR_TEXT_REGION 17 50 31 50 50
HELIX 36 50 36
COLOUR_TEXT_REGION 36 50 36 50 50
STRAND 37 51 38
COLOUR_TEXT_REGION 37 51 38 51 51
HELIX 17 51 32
COLOUR_TEXT_REGION 17 51 32 51 50
HELIX 36 51 36
COLOUR_TEXT_REGION 36 51 36 51 50
HELIX 39 51 43
COLOUR_TEXT_REGION 39 51 43 51 50