SILENT_MODE BLOCK_FILE jp_d8TBDV5.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_d8TBDV5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 43 29 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 30 43 39 H SPACE SUB_CHARS 1 30 43 39 E SPACE SUB_CHARS 1 30 43 39 - SPACE HELIX 12 33 28 COLOUR_TEXT_REGION 12 33 28 33 50 HELIX 33 33 41 COLOUR_TEXT_REGION 33 33 41 33 50 HELIX 12 38 28 COLOUR_TEXT_REGION 12 38 28 38 50 HELIX 32 38 35 COLOUR_TEXT_REGION 32 38 35 38 50 HELIX 37 38 41 COLOUR_TEXT_REGION 37 38 41 38 50 HELIX 12 39 28 COLOUR_TEXT_REGION 12 39 28 39 50 HELIX 33 39 38 COLOUR_TEXT_REGION 33 39 38 39 50