QUERY : ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS : QUERY
UniRef90_G5B6F9 : IHSKPPREQLGTMDVVVGLTTCFLCFLLPSGWVLSHLKSYKKQ : UniRef90_G5B6F9
UniRef90_UPI0002C42A64 : INSKPPREQLGTMDYIIGLTSCFVCFLGPAGWVMAHMENYKKR : UniRef90_UPI0002C42A64
UniRef90_UPI00042ACCC8 : IHSKPPREQLGVVDVTVGLTSCFICCLLPAGWVLSHLESYKKR : UniRef90_UPI00042ACCC8
UniRef90_UPI0000E35F5B : ISSKPPREQLGPLDVTIALTSCFLCFLVPSGWVLSHLENYKKR : UniRef90_UPI0000E35F5B
UniRef90_UPI0003331FEC : -HSKPPREQLGVMEMTIALTSCFLCCLVPAGWVLSHLENYKKR : UniRef90_UPI0003331FEC
UniRef90_G3T786 : IHSKPPREPLGTTDCIIALTSCFLCFLVPPAWIMTHLDSYRKR : UniRef90_G3T786
UniRef90_UPI0003317761 : VHSRPPREPFGTTDVVVGLTACFLCFLVPPGWVLANLESYKKR : UniRef90_UPI0003317761
UniRef90_UPI0003340B8A : IHSKAPLEQLGTMECVFAFTTSFLCFFVPSGWIMSHMENYKKR : UniRef90_UPI0003340B8A
UniRef90_UPI0002C54904 : MDSKPPQEQLGVTDVTTGLTSCFLCFFLSSGWVLSHLETYKKQ : UniRef90_UPI0002C54904
UniRef90_UPI0002C45783 : IHSKFLKEQLGTMDYIIELTSCFLYLLVPSSWVLSHLESYKKQ : UniRef90_UPI0002C45783
UniRef90_F6XUS1 : LHARPAREELSLGDKLIAMTTCFLCLLLPPGWILSHMDSYKKK : UniRef90_F6XUS1
UniRef90_Q863G8 : VHSMPPEVELGIMEKAIGLTSCFVSLFLPAGWILSHLEDYKR- : UniRef90_Q863G8
UniRef90_UPI0003ACCB54 : --------ELGTMDVTIGLTSCFLCFLLPAGWILSHLDDYKKR : UniRef90_UPI0003ACCB54
UniRef90_UPI0002C440E0 : ISAKPARTPTSTKEQAIGLTTIFCTFLLPAGWVLSHLEHYKKS : UniRef90_UPI0002C440E0
UniRef90_D7NY99 : VHSKPPREQLGTMDIAIGLTSCFLCILLPAGW----------- : UniRef90_D7NY99
UniRef90_D2HUA4 : --SSPGRRSSGTLDVATGLTSCFLHFLLPPGWVLSHLESYK-- : UniRef90_D2HUA4
UniRef90_UPI0003AF2F24 : -------------DIAIGLTSCFLCFLLPSGWVLSHLDSYKKR : UniRef90_UPI0003AF2F24
UniRef90_UPI0003F096CA : VHSKPVQEKIGIMDSITGLTACFICCLVPPAWDLEELE----- : UniRef90_UPI0003F096CA
UniRef90_UPI0003EC44CB : ----------SVQDVVIGLSSCFVCILGPSGWVLSHLESYKKR : UniRef90_UPI0003EC44CB
UniRef90_L9KB04 : ------------MDV--GLTSCFLCFLLPPGWVLSHLES---- : UniRef90_L9KB04
UniRef90_L8HWJ0 : -HLEPPRRRVSTVEVAIALVVFFTAFLTPRGYVLSNLDQFRRE : UniRef90_L8HWJ0
UniRef90_UPI00027391DA : -----PVEPVNAMETVFALAVIFSSHLIPCGWVLTHLESYRR- : UniRef90_UPI00027391DA
UniRef90_UPI0003AFCC5F : -SSKRLKQFSTSEEVAIALVVFFTAFLTPRGYVLSNLDQFRRE : UniRef90_UPI0003AFCC5F
UniRef90_UPI000443DAA0 : -------------DVTAGLGVIFTCFLTPAAYVMSNLEQFRR- : UniRef90_UPI000443DAA0
UniRef90_UPI00006C0A3A : -HSEPPRQPMYAMEIWLLEFWCFTTFLTPSAYVLSSLSQFRKE : UniRef90_UPI00006C0A3A
: 1---------11--------21--------31--------41- :
OrigSeq : ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS : OrigSeq
Jnet : -----------HHHHHHHHHHHHHHHHH----HHHHHHHHH-- : Jnet
jhmm : -----------HHHHHHHHHHHHHHHHH---HHHH-HHHHH-- : jhmm
jpssm : -----------HHHHHHHHHHHHHHHHH----HHHHHH----- : jpssm
Lupas 14 : ------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------- : Lupas 28
Jnet_25 : ---------B--BBBBBBB-BBBBBBBBBBBBBB-BB--B--- : Jnet_25
Jnet_5 : ----------------BB---BB-B---B-B-BB--------- : Jnet_5
Jnet_0 : ------------------------B------------------ : Jnet_0
Jnet Rel : 8988888876525689999999999861577056623342089 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.