SILENT_MODE BLOCK_FILE jp_JujrMNa.concise.blc MAX_NSEQ 257 MAX_INPUT_LEN 259 OUTPUT_FILE jp_JujrMNa.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 114 246 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 247 114 256 H SPACE SUB_CHARS 1 247 114 256 E SPACE SUB_CHARS 1 247 114 256 - SPACE STRAND 13 250 14 COLOUR_TEXT_REGION 13 250 14 250 51 STRAND 60 250 65 COLOUR_TEXT_REGION 60 250 65 250 51 STRAND 84 250 89 COLOUR_TEXT_REGION 84 250 89 250 51 STRAND 94 250 101 COLOUR_TEXT_REGION 94 250 101 250 51 HELIX 16 250 29 COLOUR_TEXT_REGION 16 250 29 250 50 STRAND 13 255 14 COLOUR_TEXT_REGION 13 255 14 255 51 STRAND 60 255 65 COLOUR_TEXT_REGION 60 255 65 255 51 STRAND 84 255 89 COLOUR_TEXT_REGION 84 255 89 255 51 STRAND 94 255 101 COLOUR_TEXT_REGION 94 255 101 255 51 HELIX 16 255 28 COLOUR_TEXT_REGION 16 255 28 255 50 STRAND 12 256 14 COLOUR_TEXT_REGION 12 256 14 256 51 STRAND 60 256 64 COLOUR_TEXT_REGION 60 256 64 256 51 STRAND 85 256 88 COLOUR_TEXT_REGION 85 256 88 256 51 STRAND 94 256 102 COLOUR_TEXT_REGION 94 256 102 256 51 STRAND 111 256 111 COLOUR_TEXT_REGION 111 256 111 256 51 HELIX 16 256 31 COLOUR_TEXT_REGION 16 256 31 256 50