SILENT_MODE
BLOCK_FILE jp_Gt6hufB.concise.blc
MAX_NSEQ 835
MAX_INPUT_LEN 837
OUTPUT_FILE jp_Gt6hufB.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 115 824   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 825 115 834 H SPACE
SUB_CHARS 1 825 115 834 E SPACE
SUB_CHARS 1 825 115 834 - SPACE
STRAND 3 828 7
COLOUR_TEXT_REGION 3 828 7 828 51
STRAND 12 828 17
COLOUR_TEXT_REGION 12 828 17 828 51
STRAND 26 828 29
COLOUR_TEXT_REGION 26 828 29 828 51
STRAND 35 828 35
COLOUR_TEXT_REGION 35 828 35 828 51
STRAND 37 828 45
COLOUR_TEXT_REGION 37 828 45 828 51
STRAND 50 828 51
COLOUR_TEXT_REGION 50 828 51 828 51
STRAND 85 828 86
COLOUR_TEXT_REGION 85 828 86 828 51
STRAND 89 828 102
COLOUR_TEXT_REGION 89 828 102 828 51
HELIX 52 828 53
COLOUR_TEXT_REGION 52 828 53 828 50
HELIX 81 828 84
COLOUR_TEXT_REGION 81 828 84 828 50
HELIX 106 828 113
COLOUR_TEXT_REGION 106 828 113 828 50
STRAND 2 833 7
COLOUR_TEXT_REGION 2 833 7 833 51
STRAND 12 833 17
COLOUR_TEXT_REGION 12 833 17 833 51
STRAND 26 833 30
COLOUR_TEXT_REGION 26 833 30 833 51
STRAND 38 833 46
COLOUR_TEXT_REGION 38 833 46 833 51
STRAND 50 833 52
COLOUR_TEXT_REGION 50 833 52 833 51
STRAND 84 833 86
COLOUR_TEXT_REGION 84 833 86 833 51
STRAND 89 833 102
COLOUR_TEXT_REGION 89 833 102 833 51
HELIX 106 833 113
COLOUR_TEXT_REGION 106 833 113 833 50
STRAND 3 834 7
COLOUR_TEXT_REGION 3 834 7 834 51
STRAND 12 834 17
COLOUR_TEXT_REGION 12 834 17 834 51
STRAND 25 834 29
COLOUR_TEXT_REGION 25 834 29 834 51
STRAND 34 834 42
COLOUR_TEXT_REGION 34 834 42 834 51
STRAND 90 834 102
COLOUR_TEXT_REGION 90 834 102 834 51
HELIX 50 834 55
COLOUR_TEXT_REGION 50 834 55 834 50
HELIX 58 834 63
COLOUR_TEXT_REGION 58 834 63 834 50
HELIX 78 834 89
COLOUR_TEXT_REGION 78 834 89 834 50
HELIX 106 834 113
COLOUR_TEXT_REGION 106 834 113 834 50