SILENT_MODE
BLOCK_FILE jp_01b_5s9.concise.blc
MAX_NSEQ 68
MAX_INPUT_LEN 70
OUTPUT_FILE jp_01b_5s9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 81 57   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 58 81 67 H SPACE
SUB_CHARS 1 58 81 67 E SPACE
SUB_CHARS 1 58 81 67 - SPACE
STRAND 16 61 16
COLOUR_TEXT_REGION 16 61 16 61 51
STRAND 60 61 64
COLOUR_TEXT_REGION 60 61 64 61 51
HELIX 7 61 13
COLOUR_TEXT_REGION 7 61 13 61 50
HELIX 15 61 15
COLOUR_TEXT_REGION 15 61 15 61 50
HELIX 17 61 36
COLOUR_TEXT_REGION 17 61 36 61 50
HELIX 38 61 43
COLOUR_TEXT_REGION 38 61 43 61 50
HELIX 68 61 78
COLOUR_TEXT_REGION 68 61 78 61 50
STRAND 60 66 63
COLOUR_TEXT_REGION 60 66 63 66 51
HELIX 7 66 13
COLOUR_TEXT_REGION 7 66 13 66 50
HELIX 15 66 44
COLOUR_TEXT_REGION 15 66 44 66 50
HELIX 52 66 53
COLOUR_TEXT_REGION 52 66 53 66 50
HELIX 66 66 79
COLOUR_TEXT_REGION 66 66 79 66 50
STRAND 11 67 12
COLOUR_TEXT_REGION 11 67 12 67 51
STRAND 15 67 22
COLOUR_TEXT_REGION 15 67 22 67 51
STRAND 35 67 36
COLOUR_TEXT_REGION 35 67 36 67 51
STRAND 62 67 64
COLOUR_TEXT_REGION 62 67 64 67 51
HELIX 8 67 10
COLOUR_TEXT_REGION 8 67 10 67 50
HELIX 28 67 34
COLOUR_TEXT_REGION 28 67 34 67 50
HELIX 69 67 78
COLOUR_TEXT_REGION 69 67 78 67 50