QUERY : TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK : QUERY
UniRef90_C7B2G7 : STGERPFADIITSIRYRVIHSITIPSSSIAGRLFVSTGLAYDVSGSPRPNEYSTESRRDIPLITGRFDSSEQIDEFT---- : UniRef90_C7B2G7
UniRef90_I6ZZR0 : STGERSFADIITSIRYWGGHSEAIPWKFQEVRLLVSAGLAYDGKGSPRPNEYFTESSQGIPLITGR-DFWEQ--------- : UniRef90_I6ZZR0
UniRef90_H2BBU6 : -TGERSFAXXXXSXRXWVIHSITIPSLFIAGXXXXXXXXXYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF- : UniRef90_H2BBU6
UniRef90_F6JST2 : ---------------YRVIHSITIPSSFIAGRLFVSTGLAYDVFGSPRPNEYFTESRQEVPLITGRFNSLEQVDEFTRSF- : UniRef90_F6JST2
UniRef90_I7ATI5 : STGERSFADIITSIRYWVGYSEASPGKIIELLFIVITGGPEGGKSSPRPKED-THSRQGMPLIAGRFDFWEQ--------- : UniRef90_I7ATI5
UniRef90_Q9GE30 : -------------------------SLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF- : UniRef90_Q9GE30
UniRef90_P51391 : STGERPFSDIITSVRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNAKQELEDLTKGI- : UniRef90_P51391
UniRef90_Q8M9W8 : NTGERPFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTADRQEVPLITGRFNSLEQLNEITKSL- : UniRef90_Q8M9W8
UniRef90_I1IWU7 : STGERSFADIITSIQYWVIHSITIPSLFIAGWFV-SRGLAYDVFGSQGPNEYFTESRQGIPLITDRFNSLEQLDEFSRSF- : UniRef90_I1IWU7
UniRef90_B0C6T2 : -TGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQARQGLPLVTDRYEGKQQIDEFTKGL- : UniRef90_B0C6T2
UniRef90_W5BPS1 : ---------------------------FLQPLCIVSTGLAYDVFGSPRPNEYFMESRQGIPLITDRFDSLEQIDEFSRSF- : UniRef90_W5BPS1
UniRef90_D8KX84 : --------------------------------LFVSTGLAYDAFGSPRPNEYFTESRQEVPLITGRFNSLEQVDEFTRSL- : UniRef90_D8KX84
UniRef90_P05333 : STGERPFSDIITSIRYWVIHSVTIPSLFVGGWIFVSTGIVYDIFGTPRPSEYFTETRQQAPLISDRFNALEQMDQFTK--- : UniRef90_P05333
UniRef90_X5JY43 : --------------------------MFLAGWLFVSTGLAYDIFGTPRPDEYFTQTRQEIPIINNRSEAKQQVEQFIK--- : UniRef90_X5JY43
UniRef90_Q2JS34 : NTGERPFVDIITSVRYWVIHALTIPALFLAGWLFVSTGLAYDIFGTPRPNEYFTAERQELPIVSDRFNALEQLEKLTR--- : UniRef90_Q2JS34
UniRef90_C3W0L1 : NTGERSXXXXXXXXXXWVIHSITIPSLXXXXXXXXSTGXXXXXXXSPRPNEYFTESRQEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C3W0L1
UniRef90_K9ULI3 : STGERPFSDIVTSIRYWIIHSITIPALFVAGWLFVSTGLAYDAFGTPRPDEYFTQTRQELPIVSDRFESKGQLDKFVQK-- : UniRef90_K9ULI3
UniRef90_D9IXL1 : STGERPFSEIITSTRYWIIHSVTIPSLFLSGWIFIRTGLAYDLFGTPRSTDYFLPERQQVPLVNDRFSAKQELEDLTRDL- : UniRef90_D9IXL1
UniRef90_B0LM05 : --------------------------LFIAGWLFVSTGLAYDVFGSPRPNEYFTENQQRIPLITGRFEALEEQNEFSR--- : UniRef90_B0LM05
UniRef90_Q0P3N6 : STGERPFSDIVTSIRYWVIHSVTIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEERQELPLISDRYGALAQLDDL----- : UniRef90_Q0P3N6
UniRef90_B2J6T0 : TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDAFGTPRPNEYFTPARQEVPIVKNRFEAKKQVEQFI---- : UniRef90_B2J6T0
UniRef90_UPI0004771811 : TTGERPFSDIITSVRYWLIHAVTIPMLFVAGWLFVSTGLAYDVFGTPRPDEYYTKQRLELPIVSDRFESRQQIEEFIK--- : UniRef90_UPI0004771811
UniRef90_UPI000349500A : STGERPFADIVTSVRYWIIHSITIPALFLAGWLFVSTGLAYDAFGTPRPNEYYAQDTIKAPVVSDRYEAAQQIEEFLNQ-- : UniRef90_UPI000349500A
UniRef90_U5D7Q1 : STGERPFGDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPDEYFTQERQEIPIVSDRFEARQQIGTFDK--- : UniRef90_U5D7Q1
UniRef90_Q8MAV7 : NTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENQQGIPLITGRFEPLEEQNEFSR--- : UniRef90_Q8MAV7
UniRef90_D9IXI3 : STGERPFTEIITSLRYWLIHIVTIPCIFVTGLLFVKTGLPYKLFGTPRSDQYFTTLRQQIPLINDRFQVTQELDYLTEGL- : UniRef90_D9IXI3
UniRef90_U5QPC3 : STGERPFSDIITSTRYWIIHIPALTILFASGFLFVSTGLAYDVFGTPRPDEYYNSDGSKKPLVNKRFEAKQVLDEGTKN-- : UniRef90_U5QPC3
UniRef90_C3VXY0 : NTGERSFADIITSXXXXXXHSITIPSLXXXXXXXXXTDLTXXXXXXXXXXEYFTESRQEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C3VXY0
UniRef90_K9Q202 : TTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPDQYFTDSRQEIPIVTDRYDAVNEISDFNK--- : UniRef90_K9Q202
UniRef90_D5A0N7 : TTGERPFGDIITSVRYWVIHSLTIPALFIAGWLFVSTGLAYDAFGTPRPNEYFTQERQELPIITERQDSKTQIQQFI---- : UniRef90_D5A0N7
UniRef90_B0C2V3 : -TGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSESQIQIVTDRYAGKQQIDDF----- : UniRef90_B0C2V3
UniRef90_K9SGD2 : TTGERPFGDIITSVRYWIIHSLTIPALFIAGWLFVSTGLAYDVFGTPRPNEYYTLDRSDAPVLLDRFNAIDDIEDFNDSLN : UniRef90_K9SGD2
UniRef90_Q06SG1 : ---ERPFSDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDIFGAPRPNEYFTEDRQDAPLITDRFNALEQVKQLSQQ-- : UniRef90_Q06SG1
UniRef90_K9SST0 : TTGERPFSDIITSVRYWLIHSLTIPALFLAGWLFVQTGLAYDIFGTPRPNEYYTNDRQEAPILRDRYDANQEIPNYNK--- : UniRef90_K9SST0
UniRef90_UPI000470A79B : STGERPFFEIVTSVRYWVIHAVTLPSIFLAGFLFVSTGLAYDAFGTPRPNEYYLSSEVRPPVVSDRYDSKLQIDERL---- : UniRef90_UPI000470A79B
UniRef90_G1E798 : STGERPFTDIITSIRYWLIHIFTIPTLFITGFIVVYTGIVYEIFGTPRPMDYFTEYKGQVPIVNDRYNAKLELEDLTIGI- : UniRef90_G1E798
UniRef90_U9VUA9 : NTGERPFSDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYFPNNQVQVPILENRYDADNQITQF----- : UniRef90_U9VUA9
UniRef90_A9BDU4 : STGERPFFEIITSVRYWIIHAVTLPAIFIAGFLFVSTGLAYDAFGTPRPDTYFQASESKAPVVSQRFESKAQLDLRLK--- : UniRef90_A9BDU4
UniRef90_UPI0003192E5D : STGERPFGDIVTSIRYWIIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPNDYYPDNQMQLPIVSDRFDAKDQIDMFS---- : UniRef90_UPI0003192E5D
UniRef90_UPI00034B92AC : TTGERPFGEIVTSVRYWVIHTLTIPVLFIAGWLFVSTGLAYDVFGTPRPDEYFTSARQELPILQDRYNAVEQIPEYQK--- : UniRef90_UPI00034B92AC
UniRef90_C3W0E8 : NTGERSFAXXXXXXXXXXXXXXXIPSLXXXXXXXXXXXXXYDVFGSPRPXXXXTESRQEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C3W0E8
UniRef90_P19152 : TTGERPFSDIVTSIRYWVIHTVTIPSLFVAGWLFVSTGLAYDVFGTPRPDEYFTEERQEVPIINQRF-------------- : UniRef90_P19152
UniRef90_UPI00037D2C83 : TTGERPFGDIVTSIRYWIIHSITIPALFIAGWLFVSTGLAYDVFGTPRPNEYYPTARQELPIVSNRSAAKQQVDKFASQV- : UniRef90_UPI00037D2C83
UniRef90_Q06J11 : TTGERPFSDILTSIRYWIIHSITVPSLFIAGWLFVSTGLAYDVFGSPRPNEYFSNGQQEAPIVLDRF-------------- : UniRef90_Q06J11
UniRef90_U9VMM4 : NTGERPLSDIITDPQFWLLHIVNFPAVFISGWLFVSTGLAYDAFGTPHPDEYYGAGQINAPIVENRMQVKQQLDEYFQD-- : UniRef90_U9VMM4
UniRef90_C1IXG0 : NTGERSFADIITSIRYWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTXSRQEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C1IXG0
UniRef90_L8LWB2 : STGERPFSDIITSVRYWVIHSITIPMLFLAGWLFVATGLVYSVFGTPRPNEYFTETREQVPIVSDRYEARDQITNFNK--- : UniRef90_L8LWB2
UniRef90_C8CS65 : NTGERSFADIITXIRYWVIHSITIPSLFIAGWLFVSTGLAYXXXXXXXXXEYFTESRQEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C8CS65
UniRef90_I7AXE7 : STGERSFADLLTSLRYWVIHSITLTSLFIAGWLFVSTGLAYDVFGSPRPNESFTESRQGIPFRT-RFDSL----------- : UniRef90_I7AXE7
UniRef90_W5B2W7 : SMGERSFADIITSIRYWVIHSFTIPSLFIAGWLFVTMGLAYDVFGSPRPNEYFTESRQGI--------------------- : UniRef90_W5B2W7
UniRef90_C3VZW4 : -------------------HSITIPSLXXXXXXXXXXXXTYDVFGXXXXXEYFTXXXXEVPXVTGRFDPLEQLDEFTRSF- : UniRef90_C3VZW4
UniRef90_C3W0S2 : NTGERSFADXXXXXXXXXXXXITIPSLXXXXXXXXSTGLAXXXXXXXXXXXXXXXXXXEVPLVTGRFDPLEQLDEFTRSF- : UniRef90_C3W0S2
UniRef90_A0YVX4 : -TGERPFGDIITSVRYWVIHSITIPALFVAGWLFVSTGLAYDAFGTPRPDEYFTQERQE---------------------- : UniRef90_A0YVX4
: 1---------11--------21--------31--------41--------51--------61--------71-------- :
OrigSeq : TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK : OrigSeq
Jnet : ------HHHHHHH-HEHHHHHHHHHHHHHHHHHHHH-HHHHHH----------------EEEEE---HHHHHHHHHHH--- : Jnet
jhmm : ------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH------EEEE--HHHHHHHHHHHHHH-- : jhmm
jpssm : -------HHHEE--EEEEEEEE-----HHHHHHHEE-------------------------EEE----HHHHHHHHHH--- : jpssm
Lupas 14 : --------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ------B--BBB-BBBBBBBBBBBBBBBBBBBBBBBBBBBB-BBBB-----BB------BBBB--BB-B---B--B---B- : Jnet_25
Jnet_5 : ---------BB------B----------------B---------------------------B---------B-------- : Jnet_5
Jnet_0 : --------------------------------------------------------------------------------- : Jnet_0
Jnet Rel : 999876301144211001222310114122222044101111017777777337777770335143326899999874399 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.