QUERY           : ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG : QUERY 
UniRef90_C3UP01 : -RRTTVGNLLKPLNSEYGKVAPGWGTTPLMGNRNGSICGIPIYYLEIYNSSVLLDGISMN----- : UniRef90_C3UP01
UniRef90_J3MX33 : -RRTRVGNLLKPLDSEYGKVAPGWGTTPFIGAAMALF---------------------------- : UniRef90_J3MX33
UniRef90_K7KP67 : -RRTVVGDLLKPLNSEYGKVVPGWGTTPLW-VLQWLYLRYFYLLF-------------------- : UniRef90_K7KP67
UniRef90_B0YPQ5 : GKKGGVGDILKPLNSEYGKVAPGWGTTPFMGIAMALFAVSSVTIPELYNSSVLLDGVSISW---- : UniRef90_B0YPQ5
UniRef90_M1X404 : AQKTWLGNILKPLNSEYGKVAPEWGTTPLMGTFMLLFFVFLLIILQVYNKSLVIDGIPVDWHSLG : UniRef90_M1X404
UniRef90_Q5SD22 : -KSTGLGNALKPLNSEYGKVAPGWGTTPIMGVAMASFAVFSVIILELYNSSVSLDGIPVSW---- : UniRef90_Q5SD22
UniRef90_G8IZZ2 : ---------LKPLNSEYGKVAPGWGTTPLMGFAMALFAXXXSIILEIYNSSVLLDGIPVSW---- : UniRef90_G8IZZ2
UniRef90_D3WCL9 : -RRTYIGDLLKPLNSEYGKVAPRWGTTPLMGVAMALFAIFLSIILEIFNSSVLLDGISMN----- : UniRef90_D3WCL9

                : 1---------11--------21--------31--------41--------51--------61--- :
OrigSeq         : ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG : OrigSeq

Jnet            : ----HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH---EEEE---------- : Jnet
jhmm            : ----HHHHHHHH------EE-------HHHHHHHHHHHHHHHHHHHHHH--EEE----------- : jhmm
jpssm           : ------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHH---EEEE-E-------- : jpssm

Lupas 14        : ----------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------- : Lupas 28

Jnet_25         : -----BB-BB-BB---BB-BBB-BBBBBBBB-BBBBBBBBBBBBB-BB--BBBB-BB-B-B---- : Jnet_25
Jnet_5          : --------BB-----------------BBBBB--------------B----B-B----------- : Jnet_5
Jnet_0          : ----------------------------------------------------------------- : Jnet_0
Jnet Rel        : 99980436654125656633777775278999999999999999986016526501023577889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.