SILENT_MODE
BLOCK_FILE jp_sQOodXr.concise.blc
MAX_NSEQ 1020
MAX_INPUT_LEN 1022
OUTPUT_FILE jp_sQOodXr.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 278 1009   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1010 278 1019 H SPACE
SUB_CHARS 1 1010 278 1019 E SPACE
SUB_CHARS 1 1010 278 1019 - SPACE
STRAND 34 1013 38
COLOUR_TEXT_REGION 34 1013 38 1013 51
STRAND 194 1013 196
COLOUR_TEXT_REGION 194 1013 196 1013 51
STRAND 261 1013 261
COLOUR_TEXT_REGION 261 1013 261 1013 51
STRAND 269 1013 271
COLOUR_TEXT_REGION 269 1013 271 1013 51
HELIX 11 1013 26
COLOUR_TEXT_REGION 11 1013 26 1013 50
HELIX 62 1013 79
COLOUR_TEXT_REGION 62 1013 79 1013 50
HELIX 208 1013 228
COLOUR_TEXT_REGION 208 1013 228 1013 50
STRAND 34 1018 38
COLOUR_TEXT_REGION 34 1018 38 1018 51
STRAND 51 1018 52
COLOUR_TEXT_REGION 51 1018 52 1018 51
STRAND 194 1018 195
COLOUR_TEXT_REGION 194 1018 195 1018 51
HELIX 11 1018 26
COLOUR_TEXT_REGION 11 1018 26 1018 50
HELIX 61 1018 75
COLOUR_TEXT_REGION 61 1018 75 1018 50
HELIX 209 1018 228
COLOUR_TEXT_REGION 209 1018 228 1018 50
STRAND 34 1019 37
COLOUR_TEXT_REGION 34 1019 37 1019 51
STRAND 85 1019 87
COLOUR_TEXT_REGION 85 1019 87 1019 51
STRAND 194 1019 198
COLOUR_TEXT_REGION 194 1019 198 1019 51
STRAND 258 1019 262
COLOUR_TEXT_REGION 258 1019 262 1019 51
STRAND 268 1019 271
COLOUR_TEXT_REGION 268 1019 271 1019 51
HELIX 11 1019 25
COLOUR_TEXT_REGION 11 1019 25 1019 50
HELIX 63 1019 84
COLOUR_TEXT_REGION 63 1019 84 1019 50
HELIX 205 1019 228
COLOUR_TEXT_REGION 205 1019 228 1019 50