Filename Description -------- ----------- jp_tUpfLty.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_tUpfLty.als Alscript command file. Used to generate PS/PDF outputjp_tUpfLty.blast.gz PSIBLAST output (compressed) jp_tUpfLty.coils.csv The output from coils in CSV format jp_tUpfLty.coilseq.lupas_14 The output from coils using a window length of 14 jp_tUpfLty.coilseq.lupas_21 The output from coils using a window length of 21 jp_tUpfLty.coilseq.lupas_28 The output from coils using a window length of 28 jp_tUpfLty.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_tUpfLty.concise.blc A BLC file of the prediction and alignment jp_tUpfLty.concise.pdf A PDF file of the prediction and alignment jp_tUpfLty.fasta Input query sequence in FASTA format jp_tUpfLty.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_tUpfLty.hmm The HHMer2 profile of the alignment jp_tUpfLty.html A HTML file of the prediction and alignment jp_tUpfLty.input Your raw input jp_tUpfLty.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_tUpfLty.jnet The output from Jnet jp_tUpfLty.profile PSIBLAST profile jp_tUpfLty.pssm PSIBLAST PSSM in a format for Jnet jp_tUpfLty.seq Your sequence jp_tUpfLty.simple.html The brief HTML output of the query sequence and prediction only jp_tUpfLty.svg.html A Jalview generated SVG file with summary of the results.