SILENT_MODE BLOCK_FILE jp_tUpfLty.concise.blc MAX_NSEQ 562 MAX_INPUT_LEN 564 OUTPUT_FILE jp_tUpfLty.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 225 551 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 552 225 561 H SPACE SUB_CHARS 1 552 225 561 E SPACE SUB_CHARS 1 552 225 561 - SPACE STRAND 216 555 219 COLOUR_TEXT_REGION 216 555 219 555 51 HELIX 11 555 52 COLOUR_TEXT_REGION 11 555 52 555 50 HELIX 60 555 83 COLOUR_TEXT_REGION 60 555 83 555 50 HELIX 89 555 113 COLOUR_TEXT_REGION 89 555 113 555 50 HELIX 121 555 127 COLOUR_TEXT_REGION 121 555 127 555 50 HELIX 143 555 165 COLOUR_TEXT_REGION 143 555 165 555 50 HELIX 169 555 188 COLOUR_TEXT_REGION 169 555 188 555 50 HELIX 197 555 215 COLOUR_TEXT_REGION 197 555 215 555 50 STRAND 216 560 219 COLOUR_TEXT_REGION 216 560 219 560 51 HELIX 11 560 51 COLOUR_TEXT_REGION 11 560 51 560 50 HELIX 60 560 83 COLOUR_TEXT_REGION 60 560 83 560 50 HELIX 90 560 92 COLOUR_TEXT_REGION 90 560 92 560 50 HELIX 99 560 114 COLOUR_TEXT_REGION 99 560 114 560 50 HELIX 121 560 126 COLOUR_TEXT_REGION 121 560 126 560 50 HELIX 143 560 153 COLOUR_TEXT_REGION 143 560 153 560 50 HELIX 155 560 165 COLOUR_TEXT_REGION 155 560 165 560 50 HELIX 169 560 188 COLOUR_TEXT_REGION 169 560 188 560 50 HELIX 198 560 215 COLOUR_TEXT_REGION 198 560 215 560 50 STRAND 217 561 219 COLOUR_TEXT_REGION 217 561 219 561 51 HELIX 11 561 53 COLOUR_TEXT_REGION 11 561 53 561 50 HELIX 59 561 83 COLOUR_TEXT_REGION 59 561 83 561 50 HELIX 89 561 113 COLOUR_TEXT_REGION 89 561 113 561 50 HELIX 121 561 127 COLOUR_TEXT_REGION 121 561 127 561 50 HELIX 143 561 166 COLOUR_TEXT_REGION 143 561 166 561 50 HELIX 169 561 187 COLOUR_TEXT_REGION 169 561 187 561 50 HELIX 197 561 216 COLOUR_TEXT_REGION 197 561 216 561 50