SILENT_MODE
BLOCK_FILE jp_9JlwYx1.concise.blc
MAX_NSEQ 694
MAX_INPUT_LEN 696
OUTPUT_FILE jp_9JlwYx1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 171 683   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 684 171 693 H SPACE
SUB_CHARS 1 684 171 693 E SPACE
SUB_CHARS 1 684 171 693 - SPACE
STRAND 7 687 9
COLOUR_TEXT_REGION 7 687 9 687 51
STRAND 51 687 56
COLOUR_TEXT_REGION 51 687 56 687 51
STRAND 70 687 75
COLOUR_TEXT_REGION 70 687 75 687 51
STRAND 81 687 88
COLOUR_TEXT_REGION 81 687 88 687 51
HELIX 24 687 35
COLOUR_TEXT_REGION 24 687 35 687 50
HELIX 110 687 125
COLOUR_TEXT_REGION 110 687 125 687 50
HELIX 134 687 142
COLOUR_TEXT_REGION 134 687 142 687 50
HELIX 145 687 157
COLOUR_TEXT_REGION 145 687 157 687 50
STRAND 7 692 9
COLOUR_TEXT_REGION 7 692 9 692 51
STRAND 51 692 56
COLOUR_TEXT_REGION 51 692 56 692 51
STRAND 70 692 76
COLOUR_TEXT_REGION 70 692 76 692 51
STRAND 80 692 89
COLOUR_TEXT_REGION 80 692 89 692 51
HELIX 24 692 35
COLOUR_TEXT_REGION 24 692 35 692 50
HELIX 111 692 124
COLOUR_TEXT_REGION 111 692 124 692 50
HELIX 135 692 142
COLOUR_TEXT_REGION 135 692 142 692 50
HELIX 145 692 156
COLOUR_TEXT_REGION 145 692 156 692 50
HELIX 159 692 160
COLOUR_TEXT_REGION 159 692 160 692 50
STRAND 7 693 8
COLOUR_TEXT_REGION 7 693 8 693 51
STRAND 51 693 56
COLOUR_TEXT_REGION 51 693 56 693 51
STRAND 70 693 75
COLOUR_TEXT_REGION 70 693 75 693 51
STRAND 81 693 86
COLOUR_TEXT_REGION 81 693 86 693 51
STRAND 104 693 104
COLOUR_TEXT_REGION 104 693 104 693 51
HELIX 24 693 36
COLOUR_TEXT_REGION 24 693 36 693 50
HELIX 63 693 66
COLOUR_TEXT_REGION 63 693 66 693 50
HELIX 110 693 125
COLOUR_TEXT_REGION 110 693 125 693 50
HELIX 132 693 142
COLOUR_TEXT_REGION 132 693 142 693 50
HELIX 145 693 157
COLOUR_TEXT_REGION 145 693 157 693 50