SILENT_MODE
BLOCK_FILE jp_KjLWH0l.concise.blc
MAX_NSEQ 673
MAX_INPUT_LEN 675
OUTPUT_FILE jp_KjLWH0l.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 112 662   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 663 112 672 H SPACE
SUB_CHARS 1 663 112 672 E SPACE
SUB_CHARS 1 663 112 672 - SPACE
STRAND 3 666 7
COLOUR_TEXT_REGION 3 666 7 666 51
STRAND 36 666 43
COLOUR_TEXT_REGION 36 666 43 666 51
STRAND 48 666 50
COLOUR_TEXT_REGION 48 666 50 666 51
STRAND 57 666 65
COLOUR_TEXT_REGION 57 666 65 666 51
STRAND 95 666 101
COLOUR_TEXT_REGION 95 666 101 666 51
HELIX 16 666 31
COLOUR_TEXT_REGION 16 666 31 666 50
HELIX 72 666 88
COLOUR_TEXT_REGION 72 666 88 666 50
STRAND 2 671 7
COLOUR_TEXT_REGION 2 671 7 671 51
STRAND 36 671 43
COLOUR_TEXT_REGION 36 671 43 671 51
STRAND 48 671 50
COLOUR_TEXT_REGION 48 671 50 671 51
STRAND 57 671 65
COLOUR_TEXT_REGION 57 671 65 671 51
STRAND 95 671 101
COLOUR_TEXT_REGION 95 671 101 671 51
HELIX 16 671 31
COLOUR_TEXT_REGION 16 671 31 671 50
HELIX 73 671 87
COLOUR_TEXT_REGION 73 671 87 671 50
STRAND 3 672 7
COLOUR_TEXT_REGION 3 672 7 672 51
STRAND 37 672 43
COLOUR_TEXT_REGION 37 672 43 672 51
STRAND 48 672 50
COLOUR_TEXT_REGION 48 672 50 672 51
STRAND 57 672 64
COLOUR_TEXT_REGION 57 672 64 672 51
STRAND 94 672 100
COLOUR_TEXT_REGION 94 672 100 672 51
HELIX 16 672 31
COLOUR_TEXT_REGION 16 672 31 672 50
HELIX 36 672 36
COLOUR_TEXT_REGION 36 672 36 672 50
HELIX 70 672 88
COLOUR_TEXT_REGION 70 672 88 672 50