SILENT_MODE
BLOCK_FILE jp_UJUI35p.concise.blc
MAX_NSEQ 694
MAX_INPUT_LEN 696
OUTPUT_FILE jp_UJUI35p.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 151 683   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 684 151 693 H SPACE
SUB_CHARS 1 684 151 693 E SPACE
SUB_CHARS 1 684 151 693 - SPACE
STRAND 4 687 10
COLOUR_TEXT_REGION 4 687 10 687 51
STRAND 72 687 78
COLOUR_TEXT_REGION 72 687 78 687 51
STRAND 115 687 116
COLOUR_TEXT_REGION 115 687 116 687 51
HELIX 20 687 29
COLOUR_TEXT_REGION 20 687 29 687 50
HELIX 34 687 40
COLOUR_TEXT_REGION 34 687 40 687 50
HELIX 44 687 54
COLOUR_TEXT_REGION 44 687 54 687 50
HELIX 61 687 67
COLOUR_TEXT_REGION 61 687 67 687 50
HELIX 82 687 89
COLOUR_TEXT_REGION 82 687 89 687 50
HELIX 102 687 107
COLOUR_TEXT_REGION 102 687 107 687 50
HELIX 122 687 131
COLOUR_TEXT_REGION 122 687 131 687 50
STRAND 4 692 10
COLOUR_TEXT_REGION 4 692 10 692 51
STRAND 72 692 79
COLOUR_TEXT_REGION 72 692 79 692 51
STRAND 115 692 117
COLOUR_TEXT_REGION 115 692 117 692 51
HELIX 20 692 29
COLOUR_TEXT_REGION 20 692 29 692 50
HELIX 32 692 40
COLOUR_TEXT_REGION 32 692 40 692 50
HELIX 44 692 54
COLOUR_TEXT_REGION 44 692 54 692 50
HELIX 61 692 67
COLOUR_TEXT_REGION 61 692 67 692 50
HELIX 82 692 89
COLOUR_TEXT_REGION 82 692 89 692 50
HELIX 103 692 107
COLOUR_TEXT_REGION 103 692 107 692 50
HELIX 122 692 131
COLOUR_TEXT_REGION 122 692 131 692 50
STRAND 5 693 10
COLOUR_TEXT_REGION 5 693 10 693 51
STRAND 34 693 41
COLOUR_TEXT_REGION 34 693 41 693 51
STRAND 72 693 77
COLOUR_TEXT_REGION 72 693 77 693 51
STRAND 114 693 116
COLOUR_TEXT_REGION 114 693 116 693 51
HELIX 20 693 29
COLOUR_TEXT_REGION 20 693 29 693 50
HELIX 44 693 55
COLOUR_TEXT_REGION 44 693 55 693 50
HELIX 61 693 67
COLOUR_TEXT_REGION 61 693 67 693 50
HELIX 82 693 88
COLOUR_TEXT_REGION 82 693 88 693 50
HELIX 101 693 107
COLOUR_TEXT_REGION 101 693 107 693 50
HELIX 122 693 131
COLOUR_TEXT_REGION 122 693 131 693 50