SILENT_MODE
BLOCK_FILE jp_HUbYq16.concise.blc
MAX_NSEQ 843
MAX_INPUT_LEN 845
OUTPUT_FILE jp_HUbYq16.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 155 832   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 833 155 842 H SPACE
SUB_CHARS 1 833 155 842 E SPACE
SUB_CHARS 1 833 155 842 - SPACE
STRAND 93 836 97
COLOUR_TEXT_REGION 93 836 97 836 51
HELIX 5 836 25
COLOUR_TEXT_REGION 5 836 25 836 50
HELIX 36 836 60
COLOUR_TEXT_REGION 36 836 60 836 50
HELIX 63 836 80
COLOUR_TEXT_REGION 63 836 80 836 50
HELIX 110 836 120
COLOUR_TEXT_REGION 110 836 120 836 50
HELIX 126 836 152
COLOUR_TEXT_REGION 126 836 152 836 50
STRAND 93 841 97
COLOUR_TEXT_REGION 93 841 97 841 51
HELIX 5 841 26
COLOUR_TEXT_REGION 5 841 26 841 50
HELIX 36 841 60
COLOUR_TEXT_REGION 36 841 60 841 50
HELIX 62 841 79
COLOUR_TEXT_REGION 62 841 79 841 50
HELIX 110 841 120
COLOUR_TEXT_REGION 110 841 120 841 50
HELIX 126 841 153
COLOUR_TEXT_REGION 126 841 153 841 50
STRAND 93 842 97
COLOUR_TEXT_REGION 93 842 97 842 51
HELIX 5 842 24
COLOUR_TEXT_REGION 5 842 24 842 50
HELIX 36 842 59
COLOUR_TEXT_REGION 36 842 59 842 50
HELIX 63 842 81
COLOUR_TEXT_REGION 63 842 81 842 50
HELIX 109 842 120
COLOUR_TEXT_REGION 109 842 120 842 50
HELIX 127 842 152
COLOUR_TEXT_REGION 127 842 152 842 50