SILENT_MODE BLOCK_FILE jp_XTB_yiS.concise.blc MAX_NSEQ 700 MAX_INPUT_LEN 702 OUTPUT_FILE jp_XTB_yiS.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 95 689 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 690 95 699 H SPACE SUB_CHARS 1 690 95 699 E SPACE SUB_CHARS 1 690 95 699 - SPACE STRAND 16 693 22 COLOUR_TEXT_REGION 16 693 22 693 51 STRAND 27 693 33 COLOUR_TEXT_REGION 27 693 33 693 51 STRAND 40 693 43 COLOUR_TEXT_REGION 40 693 43 693 51 HELIX 2 693 8 COLOUR_TEXT_REGION 2 693 8 693 50 HELIX 45 693 53 COLOUR_TEXT_REGION 45 693 53 693 50 HELIX 60 693 68 COLOUR_TEXT_REGION 60 693 68 693 50 STRAND 16 698 21 COLOUR_TEXT_REGION 16 698 21 698 51 STRAND 27 698 33 COLOUR_TEXT_REGION 27 698 33 698 51 STRAND 41 698 43 COLOUR_TEXT_REGION 41 698 43 698 51 HELIX 0 698 3 COLOUR_TEXT_REGION 0 698 3 698 50 HELIX 5 698 9 COLOUR_TEXT_REGION 5 698 9 698 50 HELIX 45 698 53 COLOUR_TEXT_REGION 45 698 53 698 50 HELIX 60 698 68 COLOUR_TEXT_REGION 60 698 68 698 50 HELIX 75 698 77 COLOUR_TEXT_REGION 75 698 77 698 50 HELIX 81 698 82 COLOUR_TEXT_REGION 81 698 82 698 50 STRAND 15 699 22 COLOUR_TEXT_REGION 15 699 22 699 51 STRAND 27 699 31 COLOUR_TEXT_REGION 27 699 31 699 51 STRAND 40 699 43 COLOUR_TEXT_REGION 40 699 43 699 51 HELIX 2 699 8 COLOUR_TEXT_REGION 2 699 8 699 50 HELIX 45 699 53 COLOUR_TEXT_REGION 45 699 53 699 50 HELIX 60 699 68 COLOUR_TEXT_REGION 60 699 68 699 50