QUERY           : ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGIYAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPRPQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKFGLDVPKFLIAAAATVEMLGGPKNAKIVVP : QUERY 
UniRef90_K0RDT8 : LTPEDVVGVLQGRGWEATIVKQSE-CSDLVPVESSGYLKCVDGRGVDHTNTRGPKMLGGVYAIAHNRGLKTTDDLQDICREVSEKGYIPSVHGDGDGNMLGCGYCKLWLTGKFADLDPVPPTYSADDGAAAVK-AKGQVEMCKGSHAEKFVYINFVEDQTIEPNHDDQKFVVDAWAAMKFDLDVPSYLVTAAATVERLGGPKIAKLVVP : UniRef90_K0RDT8
UniRef90_C1ECX3 : --PAEIVGALQGRGWSAEIQTQSRNAYQLVKVSPNGFLKCVDGRGSDGDQQRGPKMLGGVYGIAVNRGIKTTKELEAICQEVKAAGHVPTVHGDEGG-ILGCGFCKLWLNDKFADEGMVKPKFSAEDGSKTVEKAGGVVENHVGKHTEKVVYLNFIDGMTLEPNADDQRFIVDAWAAGKFNLDVPKYCVTAAATVEKLNCPWKAVLIVP : UniRef90_C1ECX3
UniRef90_C1ECX3 : LSYGDLGVALASRGWKASILDDRDFCEKLVDVDPAGFLKCVDGRGSDGKQQHGPKMLGGVYGIAVNRGIKTTKELEAICQEVKAAGHVPTVHGDEGG-ILGCGFCKLWMNGKFTDEGGVPPDFTADQGAACVKAAGGVVENHVAKHTEKYVILNFVPGKTFVPNGKDQRFIVDCWALGKFNLDITKYALTAAATVEKLNCPWKAYIVTP : UniRef90_C1ECX3
UniRef90_A6FY58 : MTPQDIKAALEARGWTATIVPRSEVS-DIVDVGGDGLMKCVDGRPSFHPAMNGPKTLGGVYAIASMRDARDVAGLVQATRDVAAFGHVPSVHGDQHAEPMGCGYFKLWKTGKLMNLGIVPPNYSAEEGSEIVLSEGGVYETLEGAHEEQEVVINLVTDTTFEPSRESQRFVVDAWITDKFNIDAGRYLTVAAKTVELLSDVRKARIIV- : UniRef90_A6FY58
UniRef90_F9ZEW7 : -----------------------------VPVNGSVPEICVDGRTNSGYRKSAPCAAGGVYGLGSNSAATDINELQLTTQTIKEKGHQTGVHGDDHSD-CGCGACSQHITERINDLASLISKFFAENRASIIQAAGAAYEELVGQHNELGIALNTRVGTTVDRSAIRSKFVVDAWA--------------------------------- : UniRef90_F9ZEW7

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201------ :
OrigSeq         : ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGIYAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPRPQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKFGLDVPKFLIAAAATVEMLGGPKNAKIVVP : OrigSeq

Jnet            : --HHHHHHHHH-----EEEE---------E------EEEEE------------------EEEE--------HHHHHHHHHHHHH------------------HHHHHHHH--------------HHHHHHHHHHH--HHHEEEEEE-EEEEEEEEE----EE------EEEEE------------HHHHHHHHHHHH-----EEEEE-- : Jnet
jhmm            : --HHHHHHHHH-----EEE-----------------EEEEE------------------EEEE--------HHHHHHHHHHHHH-------------------HHHHHH---------------HHHHHHHHHHHH-HEEEEEEEEEEEEEEEEEE----EE------EEEEE------------HHHHHHHHHHHH-----EEEEE-- : jhmm
jpssm           : --HHHHHHHHH------EEEE-------EEE-----EEEEEE------------HHH--HEEE-------HHHHHHHHHHHHHH------EE----------HHHHHHHHHH---------------HHHHHHH---HHHHHHHH--HEEEEEEEEE-----------EEEEE-H----------HHHHHHHHHHHHH----EEEEE-- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----B--BB---BB-B-BB--B-BB--BB-B---BBBBBBBBB--------BB-BBBBBBBBBBB--B--B--B--BB--B----BBBBBBB---B-BBBBBBBBBBB---B----BB-B-B-B--BB-BB--B-BBB--B---B--BBBBBBBB----B--------BBBBBBB---B-B-BBBBBBBBBBBB--B--B--B-BBB- : Jnet_25
Jnet_5          : -----B--BB---------------B--BB---------BB-----------B--B-BBBBBBB----------B------B--------B--------BBBBBB-------B------------------B------------------BBB----------------BBB-B-B-------B---BB-BB--B-------------- : Jnet_5
Jnet_0          : ---------B-------------------------------------------------B------------------B---------------------B-------------------------------------------------B-B------------------B-B----------------B------------------ : Jnet_0
Jnet Rel        : 97699999885168861251225556621002788468886157777777655333313102157887641799999999988516887322367775111204777761231467777777661343888874216220234421213677898814521067777425541130257777632677768999986148861687369 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.