SILENT_MODE BLOCK_FILE jp_qrwXIK3.concise.blc MAX_NSEQ 908 MAX_INPUT_LEN 910 OUTPUT_FILE jp_qrwXIK3.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 300 897 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 898 300 907 H SPACE SUB_CHARS 1 898 300 907 E SPACE SUB_CHARS 1 898 300 907 - SPACE STRAND 16 901 19 COLOUR_TEXT_REGION 16 901 19 901 51 STRAND 101 901 104 COLOUR_TEXT_REGION 101 901 104 901 51 STRAND 142 901 146 COLOUR_TEXT_REGION 142 901 146 901 51 STRAND 169 901 176 COLOUR_TEXT_REGION 169 901 176 901 51 STRAND 203 901 205 COLOUR_TEXT_REGION 203 901 205 901 51 STRAND 229 901 231 COLOUR_TEXT_REGION 229 901 231 901 51 STRAND 268 901 269 COLOUR_TEXT_REGION 268 901 269 901 51 HELIX 5 901 11 COLOUR_TEXT_REGION 5 901 11 901 50 HELIX 22 901 29 COLOUR_TEXT_REGION 22 901 29 901 50 HELIX 36 901 40 COLOUR_TEXT_REGION 36 901 40 901 50 HELIX 43 901 63 COLOUR_TEXT_REGION 43 901 63 901 50 HELIX 69 901 75 COLOUR_TEXT_REGION 69 901 75 901 50 HELIX 78 901 96 COLOUR_TEXT_REGION 78 901 96 901 50 HELIX 121 901 136 COLOUR_TEXT_REGION 121 901 136 901 50 HELIX 149 901 164 COLOUR_TEXT_REGION 149 901 164 901 50 HELIX 187 901 196 COLOUR_TEXT_REGION 187 901 196 901 50 HELIX 202 901 202 COLOUR_TEXT_REGION 202 901 202 901 50 HELIX 211 901 222 COLOUR_TEXT_REGION 211 901 222 901 50 HELIX 252 901 264 COLOUR_TEXT_REGION 252 901 264 901 50 HELIX 277 901 287 COLOUR_TEXT_REGION 277 901 287 901 50 STRAND 16 906 19 COLOUR_TEXT_REGION 16 906 19 906 51 STRAND 101 906 105 COLOUR_TEXT_REGION 101 906 105 906 51 STRAND 142 906 146 COLOUR_TEXT_REGION 142 906 146 906 51 STRAND 169 906 176 COLOUR_TEXT_REGION 169 906 176 906 51 STRAND 202 906 206 COLOUR_TEXT_REGION 202 906 206 906 51 STRAND 229 906 232 COLOUR_TEXT_REGION 229 906 232 906 51 STRAND 268 906 269 COLOUR_TEXT_REGION 268 906 269 906 51 HELIX 5 906 11 COLOUR_TEXT_REGION 5 906 11 906 50 HELIX 22 906 29 COLOUR_TEXT_REGION 22 906 29 906 50 HELIX 36 906 40 COLOUR_TEXT_REGION 36 906 40 906 50 HELIX 43 906 63 COLOUR_TEXT_REGION 43 906 63 906 50 HELIX 70 906 75 COLOUR_TEXT_REGION 70 906 75 906 50 HELIX 78 906 95 COLOUR_TEXT_REGION 78 906 95 906 50 HELIX 121 906 136 COLOUR_TEXT_REGION 121 906 136 906 50 HELIX 151 906 163 COLOUR_TEXT_REGION 151 906 163 906 50 HELIX 188 906 196 COLOUR_TEXT_REGION 188 906 196 906 50 HELIX 211 906 222 COLOUR_TEXT_REGION 211 906 222 906 50 HELIX 251 906 264 COLOUR_TEXT_REGION 251 906 264 906 50 HELIX 277 906 287 COLOUR_TEXT_REGION 277 906 287 906 50 STRAND 16 907 19 COLOUR_TEXT_REGION 16 907 19 907 51 STRAND 102 907 102 COLOUR_TEXT_REGION 102 907 102 907 51 STRAND 142 907 145 COLOUR_TEXT_REGION 142 907 145 907 51 STRAND 170 907 177 COLOUR_TEXT_REGION 170 907 177 907 51 STRAND 268 907 269 COLOUR_TEXT_REGION 268 907 269 907 51 HELIX 4 907 12 COLOUR_TEXT_REGION 4 907 12 907 50 HELIX 22 907 29 COLOUR_TEXT_REGION 22 907 29 907 50 HELIX 36 907 40 COLOUR_TEXT_REGION 36 907 40 907 50 HELIX 43 907 66 COLOUR_TEXT_REGION 43 907 66 907 50 HELIX 68 907 75 COLOUR_TEXT_REGION 68 907 75 907 50 HELIX 79 907 96 COLOUR_TEXT_REGION 79 907 96 907 50 HELIX 121 907 137 COLOUR_TEXT_REGION 121 907 137 907 50 HELIX 146 907 164 COLOUR_TEXT_REGION 146 907 164 907 50 HELIX 186 907 196 COLOUR_TEXT_REGION 186 907 196 907 50 HELIX 200 907 205 COLOUR_TEXT_REGION 200 907 205 907 50 HELIX 211 907 221 COLOUR_TEXT_REGION 211 907 221 907 50 HELIX 253 907 264 COLOUR_TEXT_REGION 253 907 264 907 50 HELIX 277 907 287 COLOUR_TEXT_REGION 277 907 287 907 50