SILENT_MODE BLOCK_FILE jp_uxc8iQ2.concise.blc MAX_NSEQ 98 MAX_INPUT_LEN 100 OUTPUT_FILE jp_uxc8iQ2.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 202 87 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 88 202 97 H SPACE SUB_CHARS 1 88 202 97 E SPACE SUB_CHARS 1 88 202 97 - SPACE STRAND 80 91 81 COLOUR_TEXT_REGION 80 91 81 91 51 HELIX 8 91 30 COLOUR_TEXT_REGION 8 91 30 91 50 HELIX 34 91 48 COLOUR_TEXT_REGION 34 91 48 91 50 HELIX 57 91 72 COLOUR_TEXT_REGION 57 91 72 91 50 HELIX 89 91 102 COLOUR_TEXT_REGION 89 91 102 91 50 HELIX 106 91 125 COLOUR_TEXT_REGION 106 91 125 91 50 HELIX 129 91 139 COLOUR_TEXT_REGION 129 91 139 91 50 HELIX 145 91 153 COLOUR_TEXT_REGION 145 91 153 91 50 HELIX 159 91 163 COLOUR_TEXT_REGION 159 91 163 91 50 HELIX 167 91 182 COLOUR_TEXT_REGION 167 91 182 91 50 HELIX 189 91 200 COLOUR_TEXT_REGION 189 91 200 91 50 STRAND 80 96 81 COLOUR_TEXT_REGION 80 96 81 96 51 HELIX 9 96 30 COLOUR_TEXT_REGION 9 96 30 96 50 HELIX 34 96 48 COLOUR_TEXT_REGION 34 96 48 96 50 HELIX 58 96 71 COLOUR_TEXT_REGION 58 96 71 96 50 HELIX 90 96 102 COLOUR_TEXT_REGION 90 96 102 96 50 HELIX 106 96 126 COLOUR_TEXT_REGION 106 96 126 96 50 HELIX 129 96 139 COLOUR_TEXT_REGION 129 96 139 96 50 HELIX 145 96 154 COLOUR_TEXT_REGION 145 96 154 96 50 HELIX 159 96 163 COLOUR_TEXT_REGION 159 96 163 96 50 HELIX 167 96 182 COLOUR_TEXT_REGION 167 96 182 96 50 HELIX 189 96 200 COLOUR_TEXT_REGION 189 96 200 96 50 STRAND 80 97 81 COLOUR_TEXT_REGION 80 97 81 97 51 HELIX 8 97 30 COLOUR_TEXT_REGION 8 97 30 97 50 HELIX 34 97 40 COLOUR_TEXT_REGION 34 97 40 97 50 HELIX 43 97 48 COLOUR_TEXT_REGION 43 97 48 97 50 HELIX 56 97 72 COLOUR_TEXT_REGION 56 97 72 97 50 HELIX 88 97 101 COLOUR_TEXT_REGION 88 97 101 97 50 HELIX 107 97 125 COLOUR_TEXT_REGION 107 97 125 97 50 HELIX 129 97 138 COLOUR_TEXT_REGION 129 97 138 97 50 HELIX 145 97 153 COLOUR_TEXT_REGION 145 97 153 97 50 HELIX 160 97 163 COLOUR_TEXT_REGION 160 97 163 97 50 HELIX 167 97 181 COLOUR_TEXT_REGION 167 97 181 97 50 HELIX 188 97 200 COLOUR_TEXT_REGION 188 97 200 97 50