SILENT_MODE BLOCK_FILE jp_N09K_mR.concise.blc MAX_NSEQ 93 MAX_INPUT_LEN 95 OUTPUT_FILE jp_N09K_mR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 130 82 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 83 130 92 H SPACE SUB_CHARS 1 83 130 92 E SPACE SUB_CHARS 1 83 130 92 - SPACE STRAND 67 86 67 COLOUR_TEXT_REGION 67 86 67 86 51 HELIX 5 86 24 COLOUR_TEXT_REGION 5 86 24 86 50 HELIX 38 86 54 COLOUR_TEXT_REGION 38 86 54 86 50 HELIX 68 86 86 COLOUR_TEXT_REGION 68 86 86 86 50 HELIX 99 86 121 COLOUR_TEXT_REGION 99 86 121 86 50 HELIX 4 91 23 COLOUR_TEXT_REGION 4 91 23 91 50 HELIX 37 91 54 COLOUR_TEXT_REGION 37 91 54 91 50 HELIX 66 91 86 COLOUR_TEXT_REGION 66 91 86 91 50 HELIX 100 91 100 COLOUR_TEXT_REGION 100 91 100 91 50 HELIX 103 91 104 COLOUR_TEXT_REGION 103 91 104 91 50 HELIX 107 91 121 COLOUR_TEXT_REGION 107 91 121 91 50 STRAND 67 92 70 COLOUR_TEXT_REGION 67 92 70 92 51 STRAND 127 92 127 COLOUR_TEXT_REGION 127 92 127 92 51 HELIX 6 92 24 COLOUR_TEXT_REGION 6 92 24 92 50 HELIX 39 92 54 COLOUR_TEXT_REGION 39 92 54 92 50 HELIX 71 92 85 COLOUR_TEXT_REGION 71 92 85 92 50 HELIX 92 92 94 COLOUR_TEXT_REGION 92 92 94 92 50 HELIX 99 92 121 COLOUR_TEXT_REGION 99 92 121 92 50