SILENT_MODE
BLOCK_FILE jp_qLqdpng.concise.blc
MAX_NSEQ 890
MAX_INPUT_LEN 892
OUTPUT_FILE jp_qLqdpng.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 879   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 880 111 889 H SPACE
SUB_CHARS 1 880 111 889 E SPACE
SUB_CHARS 1 880 111 889 - SPACE
STRAND 6 883 9
COLOUR_TEXT_REGION 6 883 9 883 51
HELIX 11 883 37
COLOUR_TEXT_REGION 11 883 37 883 50
HELIX 44 883 56
COLOUR_TEXT_REGION 44 883 56 883 50
HELIX 68 883 99
COLOUR_TEXT_REGION 68 883 99 883 50
STRAND 5 888 9
COLOUR_TEXT_REGION 5 888 9 888 51
HELIX 11 888 38
COLOUR_TEXT_REGION 11 888 38 888 50
HELIX 44 888 57
COLOUR_TEXT_REGION 44 888 57 888 50
HELIX 68 888 99
COLOUR_TEXT_REGION 68 888 99 888 50
STRAND 7 889 8
COLOUR_TEXT_REGION 7 889 8 889 51
HELIX 11 889 35
COLOUR_TEXT_REGION 11 889 35 889 50
HELIX 46 889 55
COLOUR_TEXT_REGION 46 889 55 889 50
HELIX 68 889 98
COLOUR_TEXT_REGION 68 889 98 889 50