SILENT_MODE BLOCK_FILE jp_GbTXyNn.concise.blc MAX_NSEQ 834 MAX_INPUT_LEN 836 OUTPUT_FILE jp_GbTXyNn.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 121 823 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 824 121 833 H SPACE SUB_CHARS 1 824 121 833 E SPACE SUB_CHARS 1 824 121 833 - SPACE STRAND 18 827 19 COLOUR_TEXT_REGION 18 827 19 827 51 STRAND 31 827 38 COLOUR_TEXT_REGION 31 827 38 827 51 STRAND 47 827 52 COLOUR_TEXT_REGION 47 827 52 827 51 STRAND 59 827 63 COLOUR_TEXT_REGION 59 827 63 827 51 STRAND 100 827 104 COLOUR_TEXT_REGION 100 827 104 827 51 STRAND 109 827 113 COLOUR_TEXT_REGION 109 827 113 827 51 HELIX 65 827 70 COLOUR_TEXT_REGION 65 827 70 827 50 HELIX 115 827 118 COLOUR_TEXT_REGION 115 827 118 827 50 STRAND 17 832 19 COLOUR_TEXT_REGION 17 832 19 832 51 STRAND 31 832 38 COLOUR_TEXT_REGION 31 832 38 832 51 STRAND 46 832 52 COLOUR_TEXT_REGION 46 832 52 832 51 STRAND 59 832 63 COLOUR_TEXT_REGION 59 832 63 832 51 STRAND 100 832 104 COLOUR_TEXT_REGION 100 832 104 832 51 STRAND 109 832 113 COLOUR_TEXT_REGION 109 832 113 832 51 HELIX 6 832 6 COLOUR_TEXT_REGION 6 832 6 832 50 HELIX 65 832 71 COLOUR_TEXT_REGION 65 832 71 832 50 HELIX 114 832 119 COLOUR_TEXT_REGION 114 832 119 832 50 STRAND 30 833 38 COLOUR_TEXT_REGION 30 833 38 833 51 STRAND 47 833 52 COLOUR_TEXT_REGION 47 833 52 833 51 STRAND 59 833 60 COLOUR_TEXT_REGION 59 833 60 833 51 STRAND 62 833 62 COLOUR_TEXT_REGION 62 833 62 833 51 STRAND 99 833 104 COLOUR_TEXT_REGION 99 833 104 833 51 STRAND 108 833 113 COLOUR_TEXT_REGION 108 833 113 833 51 HELIX 7 833 8 COLOUR_TEXT_REGION 7 833 8 833 50 HELIX 18 833 21 COLOUR_TEXT_REGION 18 833 21 833 50 HELIX 65 833 70 COLOUR_TEXT_REGION 65 833 70 833 50 HELIX 116 833 118 COLOUR_TEXT_REGION 116 833 118 833 50