SILENT_MODE BLOCK_FILE jp_B7AoAOS.concise.blc MAX_NSEQ 905 MAX_INPUT_LEN 907 OUTPUT_FILE jp_B7AoAOS.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 82 894 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 895 82 904 H SPACE SUB_CHARS 1 895 82 904 E SPACE SUB_CHARS 1 895 82 904 - SPACE STRAND 23 898 24 COLOUR_TEXT_REGION 23 898 24 898 51 STRAND 27 898 32 COLOUR_TEXT_REGION 27 898 32 898 51 STRAND 37 898 45 COLOUR_TEXT_REGION 37 898 45 898 51 STRAND 73 898 78 COLOUR_TEXT_REGION 73 898 78 898 51 HELIX 4 898 17 COLOUR_TEXT_REGION 4 898 17 898 50 HELIX 51 898 68 COLOUR_TEXT_REGION 51 898 68 898 50 STRAND 27 903 32 COLOUR_TEXT_REGION 27 903 32 903 51 STRAND 37 903 45 COLOUR_TEXT_REGION 37 903 45 903 51 STRAND 73 903 78 COLOUR_TEXT_REGION 73 903 78 903 51 HELIX 4 903 17 COLOUR_TEXT_REGION 4 903 17 903 50 HELIX 51 903 67 COLOUR_TEXT_REGION 51 903 67 903 50 STRAND 22 904 25 COLOUR_TEXT_REGION 22 904 25 904 51 STRAND 28 904 31 COLOUR_TEXT_REGION 28 904 31 904 51 STRAND 37 904 45 COLOUR_TEXT_REGION 37 904 45 904 51 STRAND 72 904 78 COLOUR_TEXT_REGION 72 904 78 904 51 HELIX 4 904 17 COLOUR_TEXT_REGION 4 904 17 904 50 HELIX 51 904 68 COLOUR_TEXT_REGION 51 904 68 904 50