QUERY : YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDQDRQVKKDDANQ : QUERY
UniRef90_D3B0C6 : YIWYNPDPKERDTYDCAEIVRETADSFVFKTTGEERTVKKDDANQ : UniRef90_D3B0C6
UniRef90_Q9BJD3 : FAWFNPDPKDRDTFASAEVLKEGKDEWVVRTEGQTLTVKMD---- : UniRef90_Q9BJD3
: 1---------11--------21--------31--------41--- :
OrigSeq : YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDQDRQVKKDDANQ : OrigSeq
Jnet : ----------------HHEEE----EEEEEE----EEEE------ : Jnet
jhmm : -----------------EEEE----EEEEEE----EEE------- : jhmm
jpssm : -------------HHHHHHH-----EEEEEE----EEEEE----- : jpssm
Lupas 14 : --------------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------- : Lupas 28
Jnet_25 : -BBBB--------B-B--BB------BBB-B------B------- : Jnet_25
Jnet_5 : -------------------B------------------------- : Jnet_5
Jnet_0 : --------------------------------------------- : Jnet_0
Jnet Rel : 731257787765233021010787458998558845772248999 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.