SILENT_MODE
BLOCK_FILE jp_CETzh75.concise.blc
MAX_NSEQ 852
MAX_INPUT_LEN 854
OUTPUT_FILE jp_CETzh75.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 85 841   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 842 85 851 H SPACE
SUB_CHARS 1 842 85 851 E SPACE
SUB_CHARS 1 842 85 851 - SPACE
STRAND 3 845 9
COLOUR_TEXT_REGION 3 845 9 845 51
STRAND 32 845 37
COLOUR_TEXT_REGION 32 845 37 845 51
STRAND 60 845 66
COLOUR_TEXT_REGION 60 845 66 845 51
HELIX 16 845 27
COLOUR_TEXT_REGION 16 845 27 845 50
HELIX 44 845 53
COLOUR_TEXT_REGION 44 845 53 845 50
HELIX 69 845 82
COLOUR_TEXT_REGION 69 845 82 845 50
STRAND 3 850 9
COLOUR_TEXT_REGION 3 850 9 850 51
STRAND 32 850 37
COLOUR_TEXT_REGION 32 850 37 850 51
STRAND 60 850 66
COLOUR_TEXT_REGION 60 850 66 850 51
HELIX 16 850 26
COLOUR_TEXT_REGION 16 850 26 850 50
HELIX 44 850 52
COLOUR_TEXT_REGION 44 850 52 850 50
HELIX 69 850 83
COLOUR_TEXT_REGION 69 850 83 850 50
STRAND 4 851 9
COLOUR_TEXT_REGION 4 851 9 851 51
STRAND 32 851 37
COLOUR_TEXT_REGION 32 851 37 851 51
STRAND 60 851 65
COLOUR_TEXT_REGION 60 851 65 851 51
HELIX 16 851 28
COLOUR_TEXT_REGION 16 851 28 851 50
HELIX 44 851 53
COLOUR_TEXT_REGION 44 851 53 851 50
HELIX 69 851 82
COLOUR_TEXT_REGION 69 851 82 851 50