SILENT_MODE BLOCK_FILE jp_YwvxF6i.concise.blc MAX_NSEQ 876 MAX_INPUT_LEN 878 OUTPUT_FILE jp_YwvxF6i.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 188 865 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 866 188 875 H SPACE SUB_CHARS 1 866 188 875 E SPACE SUB_CHARS 1 866 188 875 - SPACE STRAND 3 869 5 COLOUR_TEXT_REGION 3 869 5 869 51 STRAND 12 869 14 COLOUR_TEXT_REGION 12 869 14 869 51 STRAND 20 869 21 COLOUR_TEXT_REGION 20 869 21 869 51 STRAND 178 869 181 COLOUR_TEXT_REGION 178 869 181 869 51 HELIX 26 869 48 COLOUR_TEXT_REGION 26 869 48 869 50 HELIX 53 869 70 COLOUR_TEXT_REGION 53 869 70 869 50 HELIX 72 869 72 COLOUR_TEXT_REGION 72 869 72 869 50 HELIX 89 869 104 COLOUR_TEXT_REGION 89 869 104 869 50 HELIX 119 869 143 COLOUR_TEXT_REGION 119 869 143 869 50 HELIX 149 869 173 COLOUR_TEXT_REGION 149 869 173 869 50 STRAND 3 874 5 COLOUR_TEXT_REGION 3 874 5 874 51 STRAND 12 874 14 COLOUR_TEXT_REGION 12 874 14 874 51 STRAND 20 874 21 COLOUR_TEXT_REGION 20 874 21 874 51 STRAND 178 874 180 COLOUR_TEXT_REGION 178 874 180 874 51 HELIX 27 874 31 COLOUR_TEXT_REGION 27 874 31 874 50 HELIX 34 874 47 COLOUR_TEXT_REGION 34 874 47 874 50 HELIX 53 874 69 COLOUR_TEXT_REGION 53 874 69 874 50 HELIX 89 874 104 COLOUR_TEXT_REGION 89 874 104 874 50 HELIX 119 874 143 COLOUR_TEXT_REGION 119 874 143 874 50 HELIX 149 874 173 COLOUR_TEXT_REGION 149 874 173 874 50 STRAND 4 875 4 COLOUR_TEXT_REGION 4 875 4 875 51 STRAND 12 875 14 COLOUR_TEXT_REGION 12 875 14 875 51 STRAND 20 875 21 COLOUR_TEXT_REGION 20 875 21 875 51 STRAND 179 875 181 COLOUR_TEXT_REGION 179 875 181 875 51 HELIX 26 875 48 COLOUR_TEXT_REGION 26 875 48 875 50 HELIX 53 875 73 COLOUR_TEXT_REGION 53 875 73 875 50 HELIX 89 875 103 COLOUR_TEXT_REGION 89 875 103 875 50 HELIX 119 875 126 COLOUR_TEXT_REGION 119 875 126 875 50 HELIX 129 875 143 COLOUR_TEXT_REGION 129 875 143 875 50 HELIX 149 875 172 COLOUR_TEXT_REGION 149 875 172 875 50