SILENT_MODE BLOCK_FILE jp_o8omJD9.concise.blc MAX_NSEQ 829 MAX_INPUT_LEN 831 OUTPUT_FILE jp_o8omJD9.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 94 818 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 819 94 828 H SPACE SUB_CHARS 1 819 94 828 E SPACE SUB_CHARS 1 819 94 828 - SPACE STRAND 28 822 33 COLOUR_TEXT_REGION 28 822 33 822 51 STRAND 39 822 46 COLOUR_TEXT_REGION 39 822 46 822 51 STRAND 70 822 75 COLOUR_TEXT_REGION 70 822 75 822 51 HELIX 2 822 9 COLOUR_TEXT_REGION 2 822 9 822 50 HELIX 11 822 23 COLOUR_TEXT_REGION 11 822 23 822 50 HELIX 49 822 65 COLOUR_TEXT_REGION 49 822 65 822 50 HELIX 83 822 88 COLOUR_TEXT_REGION 83 822 88 822 50 STRAND 28 827 33 COLOUR_TEXT_REGION 28 827 33 827 51 STRAND 39 827 47 COLOUR_TEXT_REGION 39 827 47 827 51 STRAND 70 827 74 COLOUR_TEXT_REGION 70 827 74 827 51 HELIX 0 827 9 COLOUR_TEXT_REGION 0 827 9 827 50 HELIX 11 827 23 COLOUR_TEXT_REGION 11 827 23 827 50 HELIX 49 827 65 COLOUR_TEXT_REGION 49 827 65 827 50 HELIX 81 827 87 COLOUR_TEXT_REGION 81 827 87 827 50 STRAND 3 828 7 COLOUR_TEXT_REGION 3 828 7 828 51 STRAND 28 828 34 COLOUR_TEXT_REGION 28 828 34 828 51 STRAND 39 828 45 COLOUR_TEXT_REGION 39 828 45 828 51 STRAND 70 828 76 COLOUR_TEXT_REGION 70 828 76 828 51 HELIX 12 828 24 COLOUR_TEXT_REGION 12 828 24 828 50 HELIX 48 828 65 COLOUR_TEXT_REGION 48 828 65 828 50 HELIX 83 828 88 COLOUR_TEXT_REGION 83 828 88 828 50