SILENT_MODE
BLOCK_FILE jp_7AHUpNe.concise.blc
MAX_NSEQ 381
MAX_INPUT_LEN 383
OUTPUT_FILE jp_7AHUpNe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 70 370   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 371 70 380 H SPACE
SUB_CHARS 1 371 70 380 E SPACE
SUB_CHARS 1 371 70 380 - SPACE
STRAND 4 374 12
COLOUR_TEXT_REGION 4 374 12 374 51
STRAND 53 374 60
COLOUR_TEXT_REGION 53 374 60 374 51
STRAND 65 374 68
COLOUR_TEXT_REGION 65 374 68 374 51
HELIX 25 374 27
COLOUR_TEXT_REGION 25 374 27 374 50
HELIX 34 374 46
COLOUR_TEXT_REGION 34 374 46 374 50
STRAND 5 379 12
COLOUR_TEXT_REGION 5 379 12 379 51
STRAND 53 379 60
COLOUR_TEXT_REGION 53 379 60 379 51
STRAND 65 379 69
COLOUR_TEXT_REGION 65 379 69 379 51
HELIX 25 379 27
COLOUR_TEXT_REGION 25 379 27 379 50
HELIX 34 379 45
COLOUR_TEXT_REGION 34 379 45 379 50
STRAND 4 380 13
COLOUR_TEXT_REGION 4 380 13 380 51
STRAND 53 380 60
COLOUR_TEXT_REGION 53 380 60 380 51
STRAND 65 380 68
COLOUR_TEXT_REGION 65 380 68 380 51
HELIX 25 380 28
COLOUR_TEXT_REGION 25 380 28 380 50
HELIX 34 380 46
COLOUR_TEXT_REGION 34 380 46 380 50