SILENT_MODE
BLOCK_FILE jp_etW3xp3.concise.blc
MAX_NSEQ 562
MAX_INPUT_LEN 564
OUTPUT_FILE jp_etW3xp3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 123 551   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 552 123 561 H SPACE
SUB_CHARS 1 552 123 561 E SPACE
SUB_CHARS 1 552 123 561 - SPACE
STRAND 3 555 9
COLOUR_TEXT_REGION 3 555 9 555 51
STRAND 30 555 35
COLOUR_TEXT_REGION 30 555 35 555 51
STRAND 61 555 65
COLOUR_TEXT_REGION 61 555 65 555 51
STRAND 85 555 89
COLOUR_TEXT_REGION 85 555 89 555 51
HELIX 12 555 25
COLOUR_TEXT_REGION 12 555 25 555 50
HELIX 46 555 55
COLOUR_TEXT_REGION 46 555 55 555 50
HELIX 69 555 79
COLOUR_TEXT_REGION 69 555 79 555 50
HELIX 93 555 104
COLOUR_TEXT_REGION 93 555 104 555 50
HELIX 109 555 120
COLOUR_TEXT_REGION 109 555 120 555 50
STRAND 3 560 9
COLOUR_TEXT_REGION 3 560 9 560 51
STRAND 30 560 35
COLOUR_TEXT_REGION 30 560 35 560 51
STRAND 61 560 65
COLOUR_TEXT_REGION 61 560 65 560 51
STRAND 85 560 88
COLOUR_TEXT_REGION 85 560 88 560 51
HELIX 12 560 25
COLOUR_TEXT_REGION 12 560 25 560 50
HELIX 46 560 55
COLOUR_TEXT_REGION 46 560 55 560 50
HELIX 69 560 79
COLOUR_TEXT_REGION 69 560 79 560 50
HELIX 93 560 103
COLOUR_TEXT_REGION 93 560 103 560 50
HELIX 109 560 120
COLOUR_TEXT_REGION 109 560 120 560 50
STRAND 3 561 9
COLOUR_TEXT_REGION 3 561 9 561 51
STRAND 30 561 35
COLOUR_TEXT_REGION 30 561 35 561 51
STRAND 61 561 65
COLOUR_TEXT_REGION 61 561 65 561 51
STRAND 85 561 89
COLOUR_TEXT_REGION 85 561 89 561 51
HELIX 12 561 25
COLOUR_TEXT_REGION 12 561 25 561 50
HELIX 46 561 55
COLOUR_TEXT_REGION 46 561 55 561 50
HELIX 69 561 79
COLOUR_TEXT_REGION 69 561 79 561 50
HELIX 92 561 104
COLOUR_TEXT_REGION 92 561 104 561 50
HELIX 109 561 120
COLOUR_TEXT_REGION 109 561 120 561 50