SILENT_MODE BLOCK_FILE jp_NJbbREb.concise.blc MAX_NSEQ 1020 MAX_INPUT_LEN 1022 OUTPUT_FILE jp_NJbbREb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 369 1009 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1010 369 1019 H SPACE SUB_CHARS 1 1010 369 1019 E SPACE SUB_CHARS 1 1010 369 1019 - SPACE STRAND 3 1013 7 COLOUR_TEXT_REGION 3 1013 7 1013 51 STRAND 36 1013 41 COLOUR_TEXT_REGION 36 1013 41 1013 51 STRAND 61 1013 66 COLOUR_TEXT_REGION 61 1013 66 1013 51 STRAND 73 1013 81 COLOUR_TEXT_REGION 73 1013 81 1013 51 STRAND 86 1013 89 COLOUR_TEXT_REGION 86 1013 89 1013 51 STRAND 129 1013 134 COLOUR_TEXT_REGION 129 1013 134 1013 51 STRAND 170 1013 174 COLOUR_TEXT_REGION 170 1013 174 1013 51 STRAND 188 1013 192 COLOUR_TEXT_REGION 188 1013 192 1013 51 STRAND 199 1013 200 COLOUR_TEXT_REGION 199 1013 200 1013 51 STRAND 206 1013 209 COLOUR_TEXT_REGION 206 1013 209 1013 51 STRAND 288 1013 292 COLOUR_TEXT_REGION 288 1013 292 1013 51 STRAND 316 1013 322 COLOUR_TEXT_REGION 316 1013 322 1013 51 HELIX 17 1013 31 COLOUR_TEXT_REGION 17 1013 31 1013 50 HELIX 49 1013 56 COLOUR_TEXT_REGION 49 1013 56 1013 50 HELIX 90 1013 94 COLOUR_TEXT_REGION 90 1013 94 1013 50 HELIX 113 1013 124 COLOUR_TEXT_REGION 113 1013 124 1013 50 HELIX 142 1013 154 COLOUR_TEXT_REGION 142 1013 154 1013 50 HELIX 205 1013 205 COLOUR_TEXT_REGION 205 1013 205 1013 50 HELIX 217 1013 237 COLOUR_TEXT_REGION 217 1013 237 1013 50 HELIX 251 1013 262 COLOUR_TEXT_REGION 251 1013 262 1013 50 HELIX 266 1013 266 COLOUR_TEXT_REGION 266 1013 266 1013 50 HELIX 268 1013 284 COLOUR_TEXT_REGION 268 1013 284 1013 50 HELIX 302 1013 311 COLOUR_TEXT_REGION 302 1013 311 1013 50 HELIX 327 1013 333 COLOUR_TEXT_REGION 327 1013 333 1013 50 HELIX 340 1013 367 COLOUR_TEXT_REGION 340 1013 367 1013 50 STRAND 3 1018 7 COLOUR_TEXT_REGION 3 1018 7 1018 51 STRAND 37 1018 41 COLOUR_TEXT_REGION 37 1018 41 1018 51 STRAND 61 1018 66 COLOUR_TEXT_REGION 61 1018 66 1018 51 STRAND 74 1018 81 COLOUR_TEXT_REGION 74 1018 81 1018 51 STRAND 86 1018 91 COLOUR_TEXT_REGION 86 1018 91 1018 51 STRAND 109 1018 110 COLOUR_TEXT_REGION 109 1018 110 1018 51 STRAND 129 1018 134 COLOUR_TEXT_REGION 129 1018 134 1018 51 STRAND 175 1018 175 COLOUR_TEXT_REGION 175 1018 175 1018 51 STRAND 188 1018 193 COLOUR_TEXT_REGION 188 1018 193 1018 51 STRAND 200 1018 200 COLOUR_TEXT_REGION 200 1018 200 1018 51 STRAND 205 1018 209 COLOUR_TEXT_REGION 205 1018 209 1018 51 STRAND 288 1018 292 COLOUR_TEXT_REGION 288 1018 292 1018 51 STRAND 300 1018 300 COLOUR_TEXT_REGION 300 1018 300 1018 51 STRAND 316 1018 322 COLOUR_TEXT_REGION 316 1018 322 1018 51 HELIX 17 1018 31 COLOUR_TEXT_REGION 17 1018 31 1018 50 HELIX 49 1018 56 COLOUR_TEXT_REGION 49 1018 56 1018 50 HELIX 92 1018 94 COLOUR_TEXT_REGION 92 1018 94 1018 50 HELIX 113 1018 124 COLOUR_TEXT_REGION 113 1018 124 1018 50 HELIX 141 1018 155 COLOUR_TEXT_REGION 141 1018 155 1018 50 HELIX 169 1018 174 COLOUR_TEXT_REGION 169 1018 174 1018 50 HELIX 217 1018 237 COLOUR_TEXT_REGION 217 1018 237 1018 50 HELIX 251 1018 262 COLOUR_TEXT_REGION 251 1018 262 1018 50 HELIX 268 1018 284 COLOUR_TEXT_REGION 268 1018 284 1018 50 HELIX 301 1018 311 COLOUR_TEXT_REGION 301 1018 311 1018 50 HELIX 328 1018 328 COLOUR_TEXT_REGION 328 1018 328 1018 50 HELIX 331 1018 332 COLOUR_TEXT_REGION 331 1018 332 1018 50 HELIX 340 1018 367 COLOUR_TEXT_REGION 340 1018 367 1018 50 STRAND 3 1019 8 COLOUR_TEXT_REGION 3 1019 8 1019 51 STRAND 36 1019 40 COLOUR_TEXT_REGION 36 1019 40 1019 51 STRAND 61 1019 66 COLOUR_TEXT_REGION 61 1019 66 1019 51 STRAND 73 1019 81 COLOUR_TEXT_REGION 73 1019 81 1019 51 STRAND 129 1019 134 COLOUR_TEXT_REGION 129 1019 134 1019 51 STRAND 170 1019 174 COLOUR_TEXT_REGION 170 1019 174 1019 51 STRAND 187 1019 191 COLOUR_TEXT_REGION 187 1019 191 1019 51 STRAND 198 1019 200 COLOUR_TEXT_REGION 198 1019 200 1019 51 STRAND 288 1019 292 COLOUR_TEXT_REGION 288 1019 292 1019 51 STRAND 316 1019 322 COLOUR_TEXT_REGION 316 1019 322 1019 51 HELIX 17 1019 31 COLOUR_TEXT_REGION 17 1019 31 1019 50 HELIX 48 1019 56 COLOUR_TEXT_REGION 48 1019 56 1019 50 HELIX 86 1019 95 COLOUR_TEXT_REGION 86 1019 95 1019 50 HELIX 115 1019 125 COLOUR_TEXT_REGION 115 1019 125 1019 50 HELIX 146 1019 150 COLOUR_TEXT_REGION 146 1019 150 1019 50 HELIX 205 1019 209 COLOUR_TEXT_REGION 205 1019 209 1019 50 HELIX 217 1019 237 COLOUR_TEXT_REGION 217 1019 237 1019 50 HELIX 251 1019 262 COLOUR_TEXT_REGION 251 1019 262 1019 50 HELIX 266 1019 276 COLOUR_TEXT_REGION 266 1019 276 1019 50 HELIX 279 1019 284 COLOUR_TEXT_REGION 279 1019 284 1019 50 HELIX 302 1019 311 COLOUR_TEXT_REGION 302 1019 311 1019 50 HELIX 327 1019 333 COLOUR_TEXT_REGION 327 1019 333 1019 50 HELIX 340 1019 367 COLOUR_TEXT_REGION 340 1019 367 1019 50