SILENT_MODE
BLOCK_FILE jp_2tWYTT3.concise.blc
MAX_NSEQ 988
MAX_INPUT_LEN 990
OUTPUT_FILE jp_2tWYTT3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 76 977   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 978 76 987 H SPACE
SUB_CHARS 1 978 76 987 E SPACE
SUB_CHARS 1 978 76 987 - SPACE
STRAND 7 981 13
COLOUR_TEXT_REGION 7 981 13 981 51
STRAND 18 981 23
COLOUR_TEXT_REGION 18 981 23 981 51
STRAND 27 981 34
COLOUR_TEXT_REGION 27 981 34 981 51
STRAND 44 981 49
COLOUR_TEXT_REGION 44 981 49 981 51
HELIX 50 981 54
COLOUR_TEXT_REGION 50 981 54 981 50
HELIX 58 981 74
COLOUR_TEXT_REGION 58 981 74 981 50
STRAND 7 986 13
COLOUR_TEXT_REGION 7 986 13 986 51
STRAND 18 986 23
COLOUR_TEXT_REGION 18 986 23 986 51
STRAND 27 986 34
COLOUR_TEXT_REGION 27 986 34 986 51
STRAND 44 986 48
COLOUR_TEXT_REGION 44 986 48 986 51
HELIX 49 986 54
COLOUR_TEXT_REGION 49 986 54 986 50
HELIX 58 986 74
COLOUR_TEXT_REGION 58 986 74 986 50
STRAND 7 987 13
COLOUR_TEXT_REGION 7 987 13 987 51
STRAND 18 987 23
COLOUR_TEXT_REGION 18 987 23 987 51
STRAND 27 987 34
COLOUR_TEXT_REGION 27 987 34 987 51
STRAND 44 987 49
COLOUR_TEXT_REGION 44 987 49 987 51
HELIX 51 987 54
COLOUR_TEXT_REGION 51 987 54 987 50
HELIX 58 987 74
COLOUR_TEXT_REGION 58 987 74 987 50