SILENT_MODE BLOCK_FILE jp_Llmd4mR.concise.blc MAX_NSEQ 660 MAX_INPUT_LEN 662 OUTPUT_FILE jp_Llmd4mR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 127 649 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 650 127 659 H SPACE SUB_CHARS 1 650 127 659 E SPACE SUB_CHARS 1 650 127 659 - SPACE STRAND 30 653 36 COLOUR_TEXT_REGION 30 653 36 653 51 STRAND 42 653 49 COLOUR_TEXT_REGION 42 653 49 653 51 STRAND 52 653 56 COLOUR_TEXT_REGION 52 653 56 653 51 STRAND 62 653 66 COLOUR_TEXT_REGION 62 653 66 653 51 STRAND 93 653 99 COLOUR_TEXT_REGION 93 653 99 653 51 STRAND 103 653 108 COLOUR_TEXT_REGION 103 653 108 653 51 STRAND 112 653 116 COLOUR_TEXT_REGION 112 653 116 653 51 STRAND 122 653 124 COLOUR_TEXT_REGION 122 653 124 653 51 HELIX 13 653 23 COLOUR_TEXT_REGION 13 653 23 653 50 HELIX 79 653 87 COLOUR_TEXT_REGION 79 653 87 653 50 STRAND 30 658 36 COLOUR_TEXT_REGION 30 658 36 658 51 STRAND 42 658 49 COLOUR_TEXT_REGION 42 658 49 658 51 STRAND 52 658 56 COLOUR_TEXT_REGION 52 658 56 658 51 STRAND 62 658 66 COLOUR_TEXT_REGION 62 658 66 658 51 STRAND 93 658 99 COLOUR_TEXT_REGION 93 658 99 658 51 STRAND 103 658 108 COLOUR_TEXT_REGION 103 658 108 658 51 STRAND 112 658 116 COLOUR_TEXT_REGION 112 658 116 658 51 STRAND 122 658 124 COLOUR_TEXT_REGION 122 658 124 658 51 HELIX 13 658 23 COLOUR_TEXT_REGION 13 658 23 658 50 HELIX 79 658 87 COLOUR_TEXT_REGION 79 658 87 658 50 STRAND 30 659 36 COLOUR_TEXT_REGION 30 659 36 659 51 STRAND 43 659 49 COLOUR_TEXT_REGION 43 659 49 659 51 STRAND 52 659 56 COLOUR_TEXT_REGION 52 659 56 659 51 STRAND 61 659 66 COLOUR_TEXT_REGION 61 659 66 659 51 STRAND 93 659 99 COLOUR_TEXT_REGION 93 659 99 659 51 STRAND 103 659 108 COLOUR_TEXT_REGION 103 659 108 659 51 STRAND 112 659 116 COLOUR_TEXT_REGION 112 659 116 659 51 STRAND 121 659 124 COLOUR_TEXT_REGION 121 659 124 659 51 HELIX 12 659 23 COLOUR_TEXT_REGION 12 659 23 659 50 HELIX 79 659 87 COLOUR_TEXT_REGION 79 659 87 659 50