SILENT_MODE
BLOCK_FILE jp_r7aG3J3.concise.blc
MAX_NSEQ 387
MAX_INPUT_LEN 389
OUTPUT_FILE jp_r7aG3J3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 376   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 377 121 386 H SPACE
SUB_CHARS 1 377 121 386 E SPACE
SUB_CHARS 1 377 121 386 - SPACE
STRAND 88 380 90
COLOUR_TEXT_REGION 88 380 90 380 51
HELIX 2 380 26
COLOUR_TEXT_REGION 2 380 26 380 50
HELIX 33 380 53
COLOUR_TEXT_REGION 33 380 53 380 50
HELIX 59 380 84
COLOUR_TEXT_REGION 59 380 84 380 50
HELIX 95 380 115
COLOUR_TEXT_REGION 95 380 115 380 50
HELIX 2 385 26
COLOUR_TEXT_REGION 2 385 26 385 50
HELIX 33 385 54
COLOUR_TEXT_REGION 33 385 54 385 50
HELIX 59 385 84
COLOUR_TEXT_REGION 59 385 84 385 50
HELIX 89 385 90
COLOUR_TEXT_REGION 89 385 90 385 50
HELIX 94 385 115
COLOUR_TEXT_REGION 94 385 115 385 50
STRAND 87 386 91
COLOUR_TEXT_REGION 87 386 91 386 51
HELIX 3 386 25
COLOUR_TEXT_REGION 3 386 25 386 50
HELIX 32 386 53
COLOUR_TEXT_REGION 32 386 53 386 50
HELIX 58 386 84
COLOUR_TEXT_REGION 58 386 84 386 50
HELIX 97 386 115
COLOUR_TEXT_REGION 97 386 115 386 50