SILENT_MODE
BLOCK_FILE jp_RKssCBX.concise.blc
MAX_NSEQ 178
MAX_INPUT_LEN 180
OUTPUT_FILE jp_RKssCBX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 63 167   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 168 63 177 H SPACE
SUB_CHARS 1 168 63 177 E SPACE
SUB_CHARS 1 168 63 177 - SPACE
STRAND 4 171 10
COLOUR_TEXT_REGION 4 171 10 171 51
STRAND 29 171 33
COLOUR_TEXT_REGION 29 171 33 171 51
STRAND 38 171 41
COLOUR_TEXT_REGION 38 171 41 171 51
HELIX 13 171 22
COLOUR_TEXT_REGION 13 171 22 171 50
HELIX 44 171 59
COLOUR_TEXT_REGION 44 171 59 171 50
STRAND 3 176 11
COLOUR_TEXT_REGION 3 176 11 176 51
STRAND 29 176 33
COLOUR_TEXT_REGION 29 176 33 176 51
STRAND 38 176 40
COLOUR_TEXT_REGION 38 176 40 176 51
HELIX 13 176 23
COLOUR_TEXT_REGION 13 176 23 176 50
HELIX 45 176 60
COLOUR_TEXT_REGION 45 176 60 176 50
STRAND 4 177 10
COLOUR_TEXT_REGION 4 177 10 177 51
STRAND 29 177 33
COLOUR_TEXT_REGION 29 177 33 177 51
STRAND 38 177 41
COLOUR_TEXT_REGION 38 177 41 177 51
HELIX 13 177 21
COLOUR_TEXT_REGION 13 177 21 177 50
HELIX 43 177 58
COLOUR_TEXT_REGION 43 177 58 177 50