SILENT_MODE
BLOCK_FILE jp__TlOUVz.concise.blc
MAX_NSEQ 649
MAX_INPUT_LEN 651
OUTPUT_FILE jp__TlOUVz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 281 638   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 639 281 648 H SPACE
SUB_CHARS 1 639 281 648 E SPACE
SUB_CHARS 1 639 281 648 - SPACE
STRAND 3 642 7
COLOUR_TEXT_REGION 3 642 7 642 51
STRAND 34 642 37
COLOUR_TEXT_REGION 34 642 37 642 51
STRAND 56 642 58
COLOUR_TEXT_REGION 56 642 58 642 51
STRAND 68 642 72
COLOUR_TEXT_REGION 68 642 72 642 51
STRAND 91 642 94
COLOUR_TEXT_REGION 91 642 94 642 51
STRAND 115 642 120
COLOUR_TEXT_REGION 115 642 120 642 51
STRAND 127 642 133
COLOUR_TEXT_REGION 127 642 133 642 51
STRAND 139 642 144
COLOUR_TEXT_REGION 139 642 144 642 51
STRAND 159 642 164
COLOUR_TEXT_REGION 159 642 164 642 51
STRAND 212 642 216
COLOUR_TEXT_REGION 212 642 216 642 51
STRAND 238 642 241
COLOUR_TEXT_REGION 238 642 241 642 51
STRAND 257 642 261
COLOUR_TEXT_REGION 257 642 261 642 51
HELIX 14 642 29
COLOUR_TEXT_REGION 14 642 29 642 50
HELIX 44 642 52
COLOUR_TEXT_REGION 44 642 52 642 50
HELIX 78 642 86
COLOUR_TEXT_REGION 78 642 86 642 50
HELIX 98 642 111
COLOUR_TEXT_REGION 98 642 111 642 50
HELIX 169 642 181
COLOUR_TEXT_REGION 169 642 181 642 50
HELIX 192 642 208
COLOUR_TEXT_REGION 192 642 208 642 50
HELIX 224 642 233
COLOUR_TEXT_REGION 224 642 233 642 50
HELIX 268 642 279
COLOUR_TEXT_REGION 268 642 279 642 50
STRAND 3 647 7
COLOUR_TEXT_REGION 3 647 7 647 51
STRAND 34 647 37
COLOUR_TEXT_REGION 34 647 37 647 51
STRAND 56 647 57
COLOUR_TEXT_REGION 56 647 57 647 51
STRAND 68 647 73
COLOUR_TEXT_REGION 68 647 73 647 51
STRAND 91 647 93
COLOUR_TEXT_REGION 91 647 93 647 51
STRAND 115 647 120
COLOUR_TEXT_REGION 115 647 120 647 51
STRAND 132 647 133
COLOUR_TEXT_REGION 132 647 133 647 51
STRAND 139 647 143
COLOUR_TEXT_REGION 139 647 143 647 51
STRAND 159 647 164
COLOUR_TEXT_REGION 159 647 164 647 51
STRAND 187 647 188
COLOUR_TEXT_REGION 187 647 188 647 51
STRAND 212 647 217
COLOUR_TEXT_REGION 212 647 217 647 51
STRAND 238 647 241
COLOUR_TEXT_REGION 238 647 241 647 51
STRAND 257 647 261
COLOUR_TEXT_REGION 257 647 261 647 51
HELIX 14 647 29
COLOUR_TEXT_REGION 14 647 29 647 50
HELIX 44 647 52
COLOUR_TEXT_REGION 44 647 52 647 50
HELIX 78 647 87
COLOUR_TEXT_REGION 78 647 87 647 50
HELIX 98 647 111
COLOUR_TEXT_REGION 98 647 111 647 50
HELIX 126 647 131
COLOUR_TEXT_REGION 126 647 131 647 50
HELIX 169 647 181
COLOUR_TEXT_REGION 169 647 181 647 50
HELIX 192 647 208
COLOUR_TEXT_REGION 192 647 208 647 50
HELIX 224 647 233
COLOUR_TEXT_REGION 224 647 233 647 50
HELIX 268 647 279
COLOUR_TEXT_REGION 268 647 279 647 50
STRAND 3 648 6
COLOUR_TEXT_REGION 3 648 6 648 51
STRAND 33 648 38
COLOUR_TEXT_REGION 33 648 38 648 51
STRAND 56 648 59
COLOUR_TEXT_REGION 56 648 59 648 51
STRAND 68 648 71
COLOUR_TEXT_REGION 68 648 71 648 51
STRAND 90 648 95
COLOUR_TEXT_REGION 90 648 95 648 51
STRAND 115 648 120
COLOUR_TEXT_REGION 115 648 120 648 51
STRAND 128 648 134
COLOUR_TEXT_REGION 128 648 134 648 51
STRAND 140 648 144
COLOUR_TEXT_REGION 140 648 144 648 51
STRAND 159 648 165
COLOUR_TEXT_REGION 159 648 165 648 51
STRAND 212 648 216
COLOUR_TEXT_REGION 212 648 216 648 51
STRAND 239 648 240
COLOUR_TEXT_REGION 239 648 240 648 51
STRAND 257 648 261
COLOUR_TEXT_REGION 257 648 261 648 51
HELIX 14 648 28
COLOUR_TEXT_REGION 14 648 28 648 50
HELIX 44 648 52
COLOUR_TEXT_REGION 44 648 52 648 50
HELIX 78 648 86
COLOUR_TEXT_REGION 78 648 86 648 50
HELIX 98 648 111
COLOUR_TEXT_REGION 98 648 111 648 50
HELIX 169 648 182
COLOUR_TEXT_REGION 169 648 182 648 50
HELIX 192 648 207
COLOUR_TEXT_REGION 192 648 207 648 50
HELIX 225 648 233
COLOUR_TEXT_REGION 225 648 233 648 50
HELIX 244 648 248
COLOUR_TEXT_REGION 244 648 248 648 50
HELIX 268 648 279
COLOUR_TEXT_REGION 268 648 279 648 50