SILENT_MODE
BLOCK_FILE jp_kMEv0aq.concise.blc
MAX_NSEQ 62
MAX_INPUT_LEN 64
OUTPUT_FILE jp_kMEv0aq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 84 51   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 52 84 61 H SPACE
SUB_CHARS 1 52 84 61 E SPACE
SUB_CHARS 1 52 84 61 - SPACE
STRAND 17 55 20
COLOUR_TEXT_REGION 17 55 20 55 51
STRAND 31 55 36
COLOUR_TEXT_REGION 31 55 36 55 51
STRAND 41 55 46
COLOUR_TEXT_REGION 41 55 46 55 51
STRAND 60 55 66
COLOUR_TEXT_REGION 60 55 66 55 51
STRAND 74 55 81
COLOUR_TEXT_REGION 74 55 81 55 51
HELIX 5 55 9
COLOUR_TEXT_REGION 5 55 9 55 50
HELIX 49 55 53
COLOUR_TEXT_REGION 49 55 53 55 50
STRAND 17 60 21
COLOUR_TEXT_REGION 17 60 21 60 51
STRAND 31 60 36
COLOUR_TEXT_REGION 31 60 36 60 51
STRAND 41 60 46
COLOUR_TEXT_REGION 41 60 46 60 51
STRAND 60 60 66
COLOUR_TEXT_REGION 60 60 66 60 51
STRAND 74 60 81
COLOUR_TEXT_REGION 74 60 81 60 51
HELIX 5 60 9
COLOUR_TEXT_REGION 5 60 9 60 50
HELIX 49 60 53
COLOUR_TEXT_REGION 49 60 53 60 50
STRAND 17 61 20
COLOUR_TEXT_REGION 17 61 20 61 51
STRAND 32 61 35
COLOUR_TEXT_REGION 32 61 35 61 51
STRAND 41 61 45
COLOUR_TEXT_REGION 41 61 45 61 51
STRAND 59 61 66
COLOUR_TEXT_REGION 59 61 66 61 51
STRAND 74 61 78
COLOUR_TEXT_REGION 74 61 78 61 51
STRAND 80 61 80
COLOUR_TEXT_REGION 80 61 80 61 51
HELIX 6 61 8
COLOUR_TEXT_REGION 6 61 8 61 50
HELIX 49 61 53
COLOUR_TEXT_REGION 49 61 53 61 50