Jpred secondary structure prediction results

QUERY                  : EYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKE : QUERY 
UniRef90_Q8VLW7        : QNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYT-GTGQAESFLKIYNDNKTIDAENFHLDVEISYEK : UniRef90_Q8VLW7
UniRef90_A0A033C0U2    : DYLDNARNIPINLWINGQHKTISTDRVSTNKKQVTAQEIDVKLRRYLQEEYNIYGHNKTNKGREYGNESKFNSGFDKGNVIFHLNNGTQFSYDLFYT-GHGQPEDFLKVYNDNKTIDSENFHLDVDLSLSK : UniRef90_A0A033C0U2
UniRef90_Q9F0L7        : -KLDSPRIIPINLIINGKHQTVTTKSVSTDKKMVTAQEIDVKLRKYLQDEFNIYGHNDTGKGKEYGTSSKFYSGFDKGSVVFHMNDGSNFSYDLFYTGY-GLPESFLKIYKDNKTVDSTQFHLDVEISKR- : UniRef90_Q9F0L7
UniRef90_D2JDI2        : -NLKQKRNIPINLSVNGENKTVVTERISTDKKMVTVQEIDVKLRKYLQDEYNIYGHNKTNKGKQYGTKSKFYSGFDTGTIVFHMNDGNNFSYDLFDY-GHGQPEDFLKIYKDNKTIDSEVFHLDVEIS--- : UniRef90_D2JDI2
UniRef90_P12993        : --LTEEKKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDS------------FGGKVQRGLIVFHSSEGSTVSYDLFDAQGQ-YPDTLLRIYRDNKTINSENLHIDLYLYT-- : UniRef90_P12993
UniRef90_D2J7F2        : -KLDKPKNVPINLWIDGAQKRVSLDKVKTDKKTVTIQELDAQARYFLQGEYLLYHNDS------------FGGKIQKGFIEFHDANGFEVSYDLFDVKGD-YPDTQLRIYNDNKTISSKNLHIDIYLFTK- : UniRef90_D2J7F2
UniRef90_Q1CQP3        : ----DKKNIPVNIFIDGVQQKYSYTDISTDKKEVTIQELDVKSRYYLQKHFNIYGFGDV---KDFGRSSRFQSGFEEGNIIFHLNSGERISYNLFDT-GHGDRESMLKKYSDNKTAYSDQLHIDIYLVK-- : UniRef90_Q1CQP3
UniRef90_P62561        : -HLEIPKKIVVKVSIDGIQ--SLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNG--------------PSKYETGYIKFIPKNKESFWFDFFPEPE-FTQSKYLMIYKDNETLDSNTSQIEVYLTTK- : UniRef90_P62561
UniRef90_A0A017XMP3    : ----------------------STDKVSTNKKLVTAQEIDTKLRRYLQEEYNIYGFNDTNKGRNYGNKSKFSSGFNAGKILFHLNDGSSFSYDLFDT-GTGQAESFLKIYNDNKTVETEKFHLDVEISYKD : UniRef90_A0A017XMP3
UniRef90_Y3P6I8        : ----------MNLWIDSIRTVVPLDIVKTNKKKVTIQELDLQARYYLHKQYNLYN------------PSTFDGKIQKGLIVFHTSKEPLVSYDLFNVIGQ-YPDKLLKIYQDNKIIESENMHIDIYLYT-- : UniRef90_Y3P6I8
UniRef90_A5X5R1        : --LTEEKKVPINLWLDGKQNTVPLETVKTNNKNVTVQELDLQARRYLQEKYNLYNSD------------VFDGKVQRGLIVFHTSTEPSVNYDLFGAQGQ-YSNTLLRIYRDNKTIN-------------- : UniRef90_A5X5R1
UniRef90_F7IVC7        : -------NITVKVYED--NENILSFDITTNKKQVTVQELDCKTRKILVSRKNLYEFN--------------NSPYETGYIKFIESSGDSFWYDMMPAPGAFDQSKYLMLYNDNKTVSSSAIAIEVHLTKK- : UniRef90_F7IVC7
UniRef90_E8SDQ3        : -HLDNHKSQTIYVKVFENSKHIITFEIQADKKLVTAQELDAKARKFLIDKLNLYEFKG--------------SPYETGYIKFIENDDKSFWYDLMPPPGNNFQSKYLTMYSDNKTVESKDIKIEVHLTKK- : UniRef90_E8SDQ3
UniRef90_UPI0002E246C3 : -----SQTIYIRVFENG--QHTITFNVQTDKKIVTAQELDVKARQFLVSKLKLYEFGG--------------SPYETAYIKFVEYGGDTFWYDMMPPPGDKFDQSYLLMYRDNKTVDSRCVKIEVHLTKNR : UniRef90_UPI0002E246C3
UniRef90_W9EKQ5        : -----------------------------KKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYKSKFNSGFNKGKITFHLNNEPSFTYDLFYT-GTGQAESFLKIYNDNKTIDAENFHLDVEISYEK : UniRef90_W9EKQ5
UniRef90_A0A012W1E1    : --LDKYRSITVRVFEDGK--NLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFN--------------NSPYETGYIKFIEN-ENSFWYDMMPAPGDKFDQSYLMMYNDNKMVDSKDVKIEVYLTTKK : UniRef90_A0A012W1E1
UniRef90_N6DEG7        : ------------MWINGVQKEVSLDKVQTDKKNVTVQELDAQARRYLQKDLKLYNNDTLG------------GKIQRGKIEFDSSDGSKVSYDLFDVKGD-FPEKQLRIYSDNKTLSTEHLHIDIYLYEK- : UniRef90_N6DEG7
UniRef90_Q76LS8        : ---SISKNIIVPVTVDNKQQ--FSFTISTNKKTVTVQELDYKVRNWLTNNKKLYEFDG--------------SAYETGYIKFIEQNKDSFWYDLFPKKDPFIPYKFVNIYGDNKTIDASSVKIEVHLTT-- : UniRef90_Q76LS8
UniRef90_A0A020B6W6    : -KYDDYKNIPCNLWIDGHQTEKELTAVKTKKKIVTIQELDVQLRNYLNEKYKLYEKGGD---------------IVKGYVKYHNDDEKNVEYD-FYNLNGEYGHEVLKMYADNKTINSDKLHLDIYLFK-- : UniRef90_A0A020B6W6
UniRef90_P0DJY7        : -HLEIPKKIVVKVSIDGIQ-SLSFDIEQIKNGNCS--RISYTVRKYLTDNKQLYTNG--------------PSKYETGYIKFIPKNKESFWFDFFPEPE-FTQSKYLMIYKDNETLDSNTSQIEVYLTTK- : UniRef90_P0DJY7
UniRef90_P01553        : ----NLQNVLIRVYEN--KRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNS--------------SPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSYLMMYNDNKTVDSKSVKIEVHLTTK- : UniRef90_P01553
UniRef90_E5QT80        : -KLSEPKEIGVAVYKD--NVNVNTFIVTTDKKKVTAQELDIKVRTKLNNVYKLYDRMT--------------SDVQKGYIKFHSHSEHSFYYDLFYIKGN-LPDQYLQIYNDNKTIDSSDYHIDVYLFT-- : UniRef90_E5QT80
UniRef90_D2J8S9        : EKIDQKNSIGVNVFKDGSQQK--GFMITTDKKEPTIQELDLKTRKVIQNQYKIYNSET--------------GNIQKGYMEFHSNS-SSFYYDLFNFKG-KYSVDFLKFYNDNKTINSSNLHIDVYLY--- : UniRef90_D2J8S9
UniRef90_Y9FLX7        : -------------------------TVKTNKKEVTVQELDLQSRHYLHETYNLYNTDA------------FNGKIQRGLIEFHPSSGDSVGYDLFGAQGQ-YPDTQLRIYRDNKTIKSKNMHIDIYLYT-- : UniRef90_Y9FLX7
UniRef90_P0A0L6        : ---ERDKLITVQVTIDNRQ--SLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDG--------------SAFESGYIKFTEKNNTSFWFDLFPKKEPFVPYKFLNIYGDNKVVDSKSIKMEVFLNT-- : UniRef90_P0A0L6
UniRef90_A0A012B8X3    : DYLEKSRRIPINLWVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNIYGFNDTNKGRNYGNKSKFSSGFNAGKYYFI------------------------------------------------ : UniRef90_A0A012B8X3
UniRef90_G7ZPL3        : --LDEERVIGVNVFKDDAQQE--GFVIKTKKAKVTVQELDTKVRFKLENLYKIYNKDT--------------GNIQKGCIFFHSHNNHSFYYDLYNIKG-SVGAEFFQFYGDNRTVNSSNYHIDVFLYK-- : UniRef90_G7ZPL3
UniRef90_Q9EZM5        : --------------VYENERNSLSFDIPTNKKNITAQEIDYKVRNYLLKHKNLYEFNS--------------SPYETGYIKFIEGSGHSFWYDLMPSGKKFYPTKYLLIYNDNKTVESKSINVEVHLTKK- : UniRef90_Q9EZM5
UniRef90_V5YRW3        : ENNTNNRIQPIVVKVYENDSVTLSFDINIDKETVTIQELDYKVRNKLISKINLYHLGGTS--------------YETGYIKFIENGNRYYWYDMMPDPG-FTQSKYLMIYRGNETVESAKTEIEVHLTKK- : UniRef90_V5YRW3
UniRef90_S5TQU4        : ----EEYHIPINLWIKGKQETKHL-TVSTKKRIVTAQEIDIKVRKLLISQYDIYSNSDQK--------------YSKGSVTLDVNSGKDITYDLYYFGNGEF-DSMLKIYINNETVTVDQCHVDVVI---- : UniRef90_S5TQU4
UniRef90_P0A0M0        : EKLAQERVIGANVWVDGIQKE--TELIRTNKKNVTLQELDIKIRKILSDKYKIYYKD---------------SEISKGLIEFDMKTPRDYSFDIYDLKGEN-DYEIDKIYEDNKTLKSDDIHIDVNLYTKK : UniRef90_P0A0M0
UniRef90_A0A033BZW7    : -------TIVVSVYID--NRNSRSFTLSTNKDHITAQELDYNVRNQLIKDEQLYEFES--------------SRFETGYIKFIENGKAVFWYDLMPPP-NFTQSKYLMIYKDNKTLLSSKTAIEVHLTKKK : UniRef90_A0A033BZW7
UniRef90_D2JDI1        : --LEGEKNIGINVFKDG--SKHETFTIATKKKMVTLQELDIKTRNKLEQSFNIYN-------KDKGDIKKGYINYHP-----HNQNDNNYYYDLYDFKG-KLSEQFFRFYNDNIIVPSSAYHIDVYLFSN- : UniRef90_D2JDI1
UniRef90_P0C0I7        : ----KEIKVPVNVWDKSKQQ--PPMFITVNKPKVTAQEVDIKVRKLLIKKYDIYNNREQK--------------YSKGTVTLDLNSGKDIVFDLYYFGNGDF-NSMLKIYSNNERIDSTQFHVDVSIS--- : UniRef90_P0C0I7
UniRef90_J7M2V0        : ---SENSKIVGNLLIDGVQQKTLINPIKIDKPIFTIQEFDFKIRQYLMQTYKIYDPN---------------SPYIKGQLEIAINGNKHESFNLYDATSSSTRSDIFKKYKDNKTINMKDFHFDIYLWTK- : UniRef90_J7M2V0
UniRef90_Q711S9        : ----------VNLWLHGKQTSVPLDTVRTYKKEVTVQELDLKARHYLHEKYNLYNPDA------------FGGKIQRGLIVFETSRKHSASYDLYAAEGKG-ADTILRI---------------------- : UniRef90_Q711S9
UniRef90_T5DX81        : -----NHKLLGNLFISGESQQNLNNKIILEKDIVTFQEIDFKIRKYLMDNYKIYD---------------ATSPYVSGRIEIGTKDGKHEQIDLFDSPNEGTRSDIFAKYKDNRIINMKNFHFDIYLEK-- : UniRef90_T5DX81
UniRef90_Q7CEP2        : QKTSIPKNIPVNLWINRKQIPVPYNQISTNKTTVTAQEIDLKVRKFLISQHQLYSSGSSYKSG---------------KLVFHTNDNSDYSFDLFYTGYRD-KESIFKVYKDNKSFNIDKIHLDIEI---- : UniRef90_Q7CEP2
UniRef90_W9ERI8        : ------------------------------RKKVTAQELDYLTRHYLVKNKKLYEFN--------------NSPYETGYIKFIES-ENSFWYDMMPAPGDKFDQSYLMMYNDNKLVDSKDVKIEVYLTTKK : UniRef90_W9ERI8
UniRef90_Q007A6        : QYLNSARKIPINLWVNGKHKTISTDKIATNKKLVTAQEIDVKLRRYLQEEYNIYGHNNTGKGKEYGY---------------------------------------------------------------- : UniRef90_Q007A6
UniRef90_D2FQX3        : -----KKSIGINVFKNGFQQK--GFVITTDKIKPIAQELDLNTRNNIQNQYKMYDSETGD--------------IQKGYIKFH-STKSSFYYDLFDFKGKK-RVDFLKFYNDNELISTKNLHIDIYLFNK- : UniRef90_D2FQX3
UniRef90_Q9X5C7        : ---------------DGKETYLPSEAVRIKKKQFTLQEFDFKIRKFLMEKYNIYDSE---------------SRYTSGSLFLATKDSKHYEVDLFNKDDKLLRDSFFKRYKDNKIFNSEEIHFDIYLKT-- : UniRef90_Q9X5C7
UniRef90_H3YEU6        : -KYDDYKNIPCNLWIDGHQTGIELTAVKTKKKIVTIQELDVQLRNYLNEKYKLYELGGD---------------IVKGYVKYHNDDEKNVEYDFY------------------------------------ : UniRef90_H3YEU6
UniRef90_Z1BA26        : --------------------------IKTKKAKVTVQELDTKVRFKLENLYKIYNKDT--------------GNIQKGCIFFHSHNDQSFYYDLYNVKG-SVGAEFFQFYSDNRTVSSSNYHIDVFLYK-- : UniRef90_Z1BA26
UniRef90_Q5XCI8        : --------------------------MSTDKKEVAIQEFDVKSRYYLQKHFNICGFSDV---KNFGRSSRFKSGLEEGNIVFHLNSGEKISYNLFDT-EFGDRESILK----STVGLSDQLYIDIDL---- : UniRef90_Q5XCI8
UniRef90_G4R4W8        : ------KTIYMNVFIDGHKKDTSKYKITFEKSPVTFQEVDVRLRKMLNDEIKLY---------------QYDSKVLSGNWEFHGSGEKEEGADLF-----KYPD-----YRYNNLIDIDKSHIDVYLFTNK : UniRef90_G4R4W8
UniRef90_A0A012EWL0    : -----------------------------------TQELDIKVRTKLNNAYKLYDRMT--------------SDVQKGYIKFHSHSEHSFYYDLFYIKGN-LPDQYLQIYNDNKTIDSSDYHIDVYLFT-- : UniRef90_A0A012EWL0
UniRef90_H2EPC8        : ----KEIKVPINVW--EKSKQHPPMFITVNKPKVTAQEVDIKVRKLLIKKYDIYNNREQK--------------YSKGTVTLDLNSGKDIVFDLYYFGNGDFNS--------------------------- : UniRef90_H2EPC8
UniRef90_A0A021NP52    : -KLSEPKNIGVAVYKD--NVNVNTFIVTTDKKKVTAQELDIKVRTKLNNAYKLYDRMT--------------SDVQKGYIKFHSHSEDKV----------------------------------------- : UniRef90_A0A021NP52
UniRef90_A9LN29        : -HLVIPKKIVVKVSIDGIQ--SLSFDTETNKKMVTAQELDYKVRKYLTDNKQLYTNG--------------PSKYETGYIKFIP----------------------------------------------- : UniRef90_A9LN29
UniRef90_A0A012UKX3    : ----------------------------------------------MTNNKKLYEFDG--------------SAYETGYIKFIEENKDSFWYDLFPKKDPFIPYKFVNIYGDNKTIDASSVKIEVHLTT-- : UniRef90_A0A012UKX3
UniRef90_C5N628        : ----------------------------------------------MNEKYKLYEQGGD---------------IVKGYVKYHNDDEQNVEYD-FYNLNGEYGYEVLKMYADNKTINRDKLHLDIYLFK-- : UniRef90_C5N628
UniRef90_G4R4W9        : EKLDS--TIYMNIF--GEQKEQSKYKITFQNKFVTFQEIDVRLRKSLMNRIKLYEHNSICK---------------KGYWGIHYKDNTTKFTDLFTHPN----------YTDNETIDMSKVHFDIYL---- : UniRef90_G4R4W9
UniRef90_Q1CQ63        : ----EEKAIYINIFEKELRTLTAKDKITFKNNIVTLQEIDVRLRKSLMSKIKLYEYDSLYK---------------KGFWDIHYKDGGIRHTNLFTYPD----------YTDNETIDMSKVHFDVHL---- : UniRef90_Q1CQ63
UniRef90_S5TIL4        : -----NKPIFMNIFEGSKRKNFSKYKITFNKTPVTFQEIDVRIRKNLMNDSEI-------------QLYQYNTKVNSGNWDIDYKSGQPKKTDFF-----KYPD-----YRDNELIDLNNVHFDIYLNPK- : UniRef90_S5TIL4
UniRef90_V6VID2        : ----EEKAIYINIISDELRALTAKDKLTFKNNMVTLQEIDVRLRKSLMGDSKI-------KLYEYG------SLYIKGFWDIHYKDGTTRHANLFSYPD----------YTDNEIIDVGKVHFDVYLNK-- : UniRef90_V6VID2
UniRef90_S5U857        : ---DLTKVVYLNIFKNNLKISTSSDKIHLNKNIITFQEIDIKVRKLLMNDINLYKSQD----------------FSTGYWILEYADKTKET-NLFTIPE----------YRYNTKFESNQIHIDVYL---- : UniRef90_S5U857

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121------- :
OrigSeq                : EYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKE : OrigSeq

Jnet                   : -------EEEEEEEEE--------EEEEE-----EEEEEHHHHHHHHHH-------------------------EEEEEEEEEE----EEEEEE---------HHHHHHH----------EEEEEEEE--- : Jnet
jhmm                   : -------EEEEEEEEE---------EEEE----EEEEEEHHHHHHHHHHHHH----------------------EEEEEEEEEE----EEEEE----------HHHHHHH----------EEEEEEEE--- : jhmm
jpssm                  : -------EEEEEEEE---------EEEEE-----EEEEEHHHHHHHHH---------------------------EEEEEEEEE----EEEEEEE-------HHHHHHHH----------EEEEEEEE--- : jpssm

Lupas 14               : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --B-----BBB-BBB-----------B-B----BBBBBBBB-BB-BBB--B-BB----------B-----B-B-B--BBB-BBB-----BBBBBBBB--------BB-BB--B-BB-B--B-BBBBB---- : Jnet_25
Jnet_5                 : ----------B-B-------------B--------B--B---B---B------------------------------B-B-B---------B-B-----------BB---------------B-B-B---- : Jnet_5
Jnet_0                 : ------------B--------------------------------------------------------------------------------B------------------------------------- : Jnet_0
Jnet Rel               : 99888745889888516777777318886388830677405788887422222467777677777767777777125789997168855899821378887516777651477646777616899985699 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.