SILENT_MODE
BLOCK_FILE jp_6odypAX.concise.blc
MAX_NSEQ 1052
MAX_INPUT_LEN 1054
OUTPUT_FILE jp_6odypAX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 140 1041   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1042 140 1051 H SPACE
SUB_CHARS 1 1042 140 1051 E SPACE
SUB_CHARS 1 1042 140 1051 - SPACE
STRAND 4 1045 12
COLOUR_TEXT_REGION 4 1045 12 1045 51
STRAND 17 1045 22
COLOUR_TEXT_REGION 17 1045 22 1045 51
STRAND 26 1045 30
COLOUR_TEXT_REGION 26 1045 30 1045 51
STRAND 74 1045 83
COLOUR_TEXT_REGION 74 1045 83 1045 51
STRAND 90 1045 99
COLOUR_TEXT_REGION 90 1045 99 1045 51
STRAND 130 1045 138
COLOUR_TEXT_REGION 130 1045 138 1045 51
HELIX 45 1045 67
COLOUR_TEXT_REGION 45 1045 67 1045 50
HELIX 105 1045 117
COLOUR_TEXT_REGION 105 1045 117 1045 50
STRAND 4 1050 12
COLOUR_TEXT_REGION 4 1050 12 1050 51
STRAND 17 1050 22
COLOUR_TEXT_REGION 17 1050 22 1050 51
STRAND 26 1050 30
COLOUR_TEXT_REGION 26 1050 30 1050 51
STRAND 74 1050 83
COLOUR_TEXT_REGION 74 1050 83 1050 51
STRAND 90 1050 99
COLOUR_TEXT_REGION 90 1050 99 1050 51
STRAND 130 1050 138
COLOUR_TEXT_REGION 130 1050 138 1050 51
HELIX 45 1050 67
COLOUR_TEXT_REGION 45 1050 67 1050 50
HELIX 105 1050 117
COLOUR_TEXT_REGION 105 1050 117 1050 50
STRAND 4 1051 12
COLOUR_TEXT_REGION 4 1051 12 1051 51
STRAND 17 1051 21
COLOUR_TEXT_REGION 17 1051 21 1051 51
STRAND 26 1051 31
COLOUR_TEXT_REGION 26 1051 31 1051 51
STRAND 75 1051 84
COLOUR_TEXT_REGION 75 1051 84 1051 51
STRAND 91 1051 100
COLOUR_TEXT_REGION 91 1051 100 1051 51
STRAND 123 1051 124
COLOUR_TEXT_REGION 123 1051 124 1051 51
STRAND 129 1051 138
COLOUR_TEXT_REGION 129 1051 138 1051 51
HELIX 46 1051 67
COLOUR_TEXT_REGION 46 1051 67 1051 50
HELIX 105 1051 117
COLOUR_TEXT_REGION 105 1051 117 1051 50