Jpred secondary structure prediction results

QUERY           : TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDIANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQSISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQLNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAAPQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ : QUERY 
UniRef90_A1BHM7 : TTTAHSDYEIILEGGSSSWGKVKGRAKVNVPPASPLLPADCNVKINVKPLDPAKGFVRFSAVIESIVDSTKNKLVVEADIANETKERRICVGEGSVTVGDFSHSFSFEGSVVNLFYYRSDAVRRNVPNPIYMQGRQFHDIIMKVPLDNNDVIDTWEGTVKALQSTGS-FNDWIREFWFIGPAFTALNEGGQRISRIEVNSIGTQSKGPVGVSRWRFSHGGSGIVDSISRWAELFPSDKLNKPASVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKVRYAAPQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ : UniRef90_A1BHM7
UniRef90_B3QW66 : STVARADYEIILEGGTSTWGKVKGRANINVPPAIPLLPTDCNIKIKAKPIGSSNDVVRFTCMIEAAVDSTIKKLSVEADIANESSDRRVSVGEGVVTVGDFSHAFAFEGSVVNLVYYKSDVIRRNVPNPRYIQGRQFHDILMKVPLENDDLIQTWEATLQAARSGSANFNSWIRDFWFIGPAQTTLYEGGQSISNIEIASIGTEGGGPLGVTNWRFSHAASGIIDSISRWTELFPVEKLKREAQIEGAFRSDSQGIEVKVDGELPGVSVDAGGGLRRVLNHPLVPLVHHGMVGKLNDFKIDAQLTVQLPKGYKLRYAAPQYKSQNAETYKWFGGTYAKWAEHVCKGGTGQFDILYAQ : UniRef90_B3QW66
UniRef90_Q710B3 : TTTAYSDYEIILEGGSSSWGQVKGRAKVNVPAALPLLPADCNIKIEAKPLDTQKGVVRFTSTIESIVDSTKNKLVVEVDIANETKDRRVAVGEGEVTVGDFSHKFSFEGSVVNMYYFRSDAVRRNVPNPIYMQGRQFHDIMMKVPLDNNDLIDTWEGFQQSISGGGANFGDWIREFWFIGPAFTAINEGGQRISPIQVNNIGVESKGPVGVSRWKFSHAGSGIVDSISRWAELFPVDQLNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLV---------------------------------------------------------------------- : UniRef90_Q710B3
UniRef90_G2LDR6 : -----SNYDLDLD--ATGWGTLRAEARINVPSASPLLPIDGELKLEAKKI--EDDVVRLTFFGQSIVDGILGRVEGESDIANESPTRRVAAGDGKITVGKFSHRFEFEGVVDCLRYWRSKAIDDNIRKQRLLCGNLFHDLSVRVPLDSEEVIDTWLEMQDAFRNS-PNFGDYIKDVWLIGPLWNALEQTGQSLDNIVYYFSEVEG-GEKSRIDFRFAGGGTGIVDSISRWLELFPIDGLGKPARLQGNFNASVQGIEVKLFVELPGFSVPIEGGKRKVLNHPLVPLAHHGIAVNSEPADLAIRFKVSIPKGKKFIETANSFEWDRVAERVFTGGRYKAWAEGICKGSYSPFDIFF-- : UniRef90_G2LDR6
UniRef90_Q9AKU1 : TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAALPLLPADCNIKIDAKPLDAQKGVVRFTTSIESIVDSTKNTLKVEVDIANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNVPNPIYMQGRQFHDIMMKVPLENNDLIDTWEGFSQSISGGGANFGDWIREFWLIGPAFAAXNEGGQRISXIQVNSFGVESKGPVGVXRWKFSHAGSG--------------------------------------------------------------------------------------------------------------------------------------- : UniRef90_Q9AKU1
UniRef90_U3PWD8 : --------RIVLEGGSSSWGKVKARAKVNVPPASPLLPADCNVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHSFSFEGSVVNMFYYRSDAVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVRAIGSTG-TFNDWIRDFWFIGPAFTALNEGGQRISRIEVNGLNTESKGPVGVSRWRFSHGGSGMVDSISRWA------------------------------------------------------------------------------------------------------------------------------ : UniRef90_U3PWD8
UniRef90_B6E5Q2 : --------------------------------------------------------------------------------------------------GDFSCKLSFEGSVVNMYYYRSDAVRRNVPNPVYMQGRQFHDIMMKVPLDNKDLIETWEGFQQSISGGGVNFGDWIREFWFIGPAYTAINEGGQRISPIQVNNFGVESKGPVGVSRWKFSHAGSGIVDSISRWAELFPVEQLNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFN------------------------------------------------------------- : UniRef90_B6E5Q2
UniRef90_Q9AL68 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGDWIREFWFIGPAFTALNEGGQRISKIEVNGMNTESKGPVGVSRWRFSHGGSGMVDSISRWAELFPADKLNRPASVEAGFRSDSQGIEVKVDGDFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNFNVDAQFKVVLPKGYKVRYAAPQFRSQNLEEYRWSGGAYARWVEHVCKGGV--------- : UniRef90_Q9AL68
UniRef90_Q9AL32 : TTTAHSDDEIILEGGSSSGGKIKGRAKVNVPAALPLLPADCNIKIEAKPLDAQKGVVRFTSQIESIVDSTKNKLVVEVDIANETKDRRVAVGEGEVSVGDFSHKFSFEGSVVNMYYYRSDAVRRNVPNPVYMQGRQFHDIMMKGPLDNNGPIETWEGIQXSISXAGSNFGDWIREFWFIGPA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : UniRef90_Q9AL32

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351---- :
OrigSeq         : TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDIANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQSISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQLNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAAPQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ : OrigSeq

Jnet            : --------EEEE-------EEEEEEEE---------------EEEEEE-------EEEEEEHHHHHHHHH---EEEEEE--------EEEE---EEEEEEEE-EEEEEEEEEEEEEEE------------EE---HHHHEEEE------HHHHHHHHHHHHHH-----HHHHHHHHHH----HHHHHH-------EEEEEE-------EEEEEEEE------HHHHHHHHHH-----------EE---------EEEEEEEE----EEE-----HEHH-----HHHHH--EE---------EEEEEEE----EEEE---------HHHHH-----HHHHHHHHH------EEEEE-- : Jnet
jhmm            : --------EEEE-------EEEEEEEE---------------EEEEE--------EEEEEEHHHHHHHHHH-EEEEEEE--------EEEE---EEEEEEEE-EEEEEEEEEEEEEEE--HH--------EEE--HHHHEEEE------HHHHHHHHHHHHHH-----HHHHHHHEEEE---HHHHHH-------EEEEEEE-------EEEEEEE-----EEEHHHHHHHH-----------EE---------EEEEEEEE----EEE-----EEE-------HHH---EEE--------EEEEEEE----EEH---------HHHHHH-----HHHHHHHHH------EEEEE-- : jhmm
jpssm           : --------EEEE-------EEEEEEEE---------------EEEEEEE------EEEEEHHHHHHHHHH---EEEEEE--------EEEE---EEEEE----EEEEE-EEEEEEEE-------------H-----HHHEEEE-------HHHHHHHHHHHHH------HHHHHHHHH---HHHHHHH-------EEEEE--------EEEEEEEE------HHHHHHHHHHH---------EEEE--------EEEEEEE-----EEEE----HHHH-----HHHHHHHH---------EEEEEEEE----EEEEE--------HHHHE----HHHHHHHHHH-----EEEEEEE- : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -------B-BBB-BB--BBB-B-B-B-B-BB-B-BBBBB-B-B-B-B--B-----BBBBBBBB-BBB-BB---B-B-B-B------BBBBBB-B-BBBB-BBB-B-B-BBBBBBBBB---BB---B--BBBBBB--BBBBBB-BBB----BB-BB--B--BB------B--BBB-BBBBBBBB-BB---B--B--B-BB---B------BBB-B-BB--B-BBB-BBB-BB-BBBB--B---B-B---B---B-BB-B-B-B-B-BBB--B--B---BB-BBBBBBBBBBBBB-B--B-B-B-B-B-BB-B--B--BB--B-B--B--B-B--B-B--BB--BB-B----B-BBB-- : Jnet_25
Jnet_5          : ---------B-B---------B--------------------B-------------B-B-------B--B---B-----------------------B------------B--B-------B-----------B--B--B-B-B----------B--------------------BBBBB------------B--B-----------------B-------BBB--B--B---------------------------B-B-----------------B----BB-BB---B--------B---B-B-B-----B------------------------BB--BB--------B---- : Jnet_5
Jnet_0          : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 998887734776157777536788875367777666777774488882358887457763257888776014048888536788762688547568981111167551358999985145223467663101141013024535788762689999999986258886023789832125523366521562574588734077777317888761588870138999987311467777751551467777750689985165635761577410011467416773000117787764157888716884584235765545001211277508999886515888617888718 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.