SILENT_MODE BLOCK_FILE jp_s0X1DPb.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_s0X1DPb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 199 9 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 10 199 19 H SPACE SUB_CHARS 1 10 199 19 E SPACE SUB_CHARS 1 10 199 19 - SPACE STRAND 3 13 4 COLOUR_TEXT_REGION 3 13 4 13 51 STRAND 30 13 35 COLOUR_TEXT_REGION 30 13 35 13 51 STRAND 58 13 61 COLOUR_TEXT_REGION 58 13 61 13 51 STRAND 67 13 69 COLOUR_TEXT_REGION 67 13 69 13 51 STRAND 93 13 98 COLOUR_TEXT_REGION 93 13 98 13 51 STRAND 136 13 136 COLOUR_TEXT_REGION 136 13 136 13 51 STRAND 146 13 150 COLOUR_TEXT_REGION 146 13 150 13 51 STRAND 157 13 161 COLOUR_TEXT_REGION 157 13 161 13 51 HELIX 12 13 26 COLOUR_TEXT_REGION 12 13 26 13 50 HELIX 38 13 48 COLOUR_TEXT_REGION 38 13 48 13 50 HELIX 66 13 66 COLOUR_TEXT_REGION 66 13 66 13 50 HELIX 70 13 74 COLOUR_TEXT_REGION 70 13 74 13 50 HELIX 104 13 110 COLOUR_TEXT_REGION 104 13 110 13 50 HELIX 114 13 124 COLOUR_TEXT_REGION 114 13 124 13 50 STRAND 3 18 5 COLOUR_TEXT_REGION 3 18 5 18 51 STRAND 29 18 35 COLOUR_TEXT_REGION 29 18 35 18 51 STRAND 58 18 60 COLOUR_TEXT_REGION 58 18 60 18 51 STRAND 66 18 70 COLOUR_TEXT_REGION 66 18 70 18 51 STRAND 93 18 99 COLOUR_TEXT_REGION 93 18 99 18 51 STRAND 136 18 137 COLOUR_TEXT_REGION 136 18 137 18 51 STRAND 146 18 150 COLOUR_TEXT_REGION 146 18 150 18 51 STRAND 157 18 161 COLOUR_TEXT_REGION 157 18 161 18 51 HELIX 12 18 26 COLOUR_TEXT_REGION 12 18 26 18 50 HELIX 38 18 47 COLOUR_TEXT_REGION 38 18 47 18 50 HELIX 104 18 110 COLOUR_TEXT_REGION 104 18 110 18 50 HELIX 114 18 124 COLOUR_TEXT_REGION 114 18 124 18 50 HELIX 183 18 186 COLOUR_TEXT_REGION 183 18 186 18 50 STRAND 3 19 4 COLOUR_TEXT_REGION 3 19 4 19 51 STRAND 30 19 35 COLOUR_TEXT_REGION 30 19 35 19 51 STRAND 58 19 61 COLOUR_TEXT_REGION 58 19 61 19 51 STRAND 93 19 98 COLOUR_TEXT_REGION 93 19 98 19 51 STRAND 135 19 136 COLOUR_TEXT_REGION 135 19 136 19 51 STRAND 149 19 150 COLOUR_TEXT_REGION 149 19 150 19 51 STRAND 157 19 161 COLOUR_TEXT_REGION 157 19 161 19 51 HELIX 12 19 26 COLOUR_TEXT_REGION 12 19 26 19 50 HELIX 38 19 48 COLOUR_TEXT_REGION 38 19 48 19 50 HELIX 65 19 75 COLOUR_TEXT_REGION 65 19 75 19 50 HELIX 105 19 110 COLOUR_TEXT_REGION 105 19 110 19 50 HELIX 115 19 124 COLOUR_TEXT_REGION 115 19 124 19 50