QUERY           : MAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVEKWGGLYVATHAEVAHGYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDETVIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKERKDEL : QUERY 
UniRef90_F9AHG8 : -AVITQQGVTNWTYQELEATHQALTQEGYVFVGYHGTNHVAAQSIVNRISPVPRWGGLYVSTDASVAYGYARIQEGTADGGGLTPAERKARGVMLRVYLPQASLERFYRINADLEKERNLVERVIGHPLPLRNEAFTGTDAEEGSDETAIGWDMAIHGVAIPSTIPGNSYAQLPIDEEAVAKEQSISAKPPYKEQKDEL : UniRef90_F9AHG8
UniRef90_X4V5K1 : ---FSTAGTRNWSVTRLEQAHRQLLARGYLFVGYHGTFLEAAHSIVSSIAP---WQGFYVAGDPALAYGYAQDQEADA-------RGRIRNGVLLRVYVPRAALPRLYATQQTLADAIDEVGRLIGHPLPLQLEAITGPEEEGGRLETILGWRLAEQAVVIPSTIPTDPRNVGGLDPASVPQEESISTLPDHTTQPRE- : UniRef90_X4V5K1
UniRef90_P11439 : ---FSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVARSQDLDAWRGFYIAGDPALAYGYAQDQE-------PDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGLDPSSIPKEQAISALPDYASQP--- : UniRef90_P11439
UniRef90_S9NZM2 : --------------QQLADAHNELTRRGYAFVGFKGSSEQGAMNAVNRAQGGDKWSGIYVSDQTAVAAGYTADEMG-----------RSKGGQLVRVYVPQQDAEKLQNLATPMDNPENEFRKNMGFRLDDRSYIIRGQETTDDRTETVLSPKVAERAVAIPSTVLVDQKFGSGEVQDFSAFERQISQTP--------- : UniRef90_S9NZM2
UniRef90_S9P266 : ----------------MRDADKRLRDNGYVFVGFKGAKHKAMDAVNNGLARMGKWSGLYVADNPQVAAGYTADDETGSAKG----------GQLVRVYVPRQDAKNLVNMETPLSKAKKEFKDTFGFRIEDRSYAIRGYEREDRETETILSGKVAARAVAIPSTIKVDQRFGGDITDYPGAEER--------------- : UniRef90_S9P266

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191------ :
OrigSeq         : MAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVEKWGGLYVATHAEVAHGYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDETVIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKERKDEL : OrigSeq

Jnet            : --EE-------HHHHHHHHHHHHHHH---EEEEEE--HHHHHHHHHHH---------EEEE----HEEEHHHHH------------------EEEEEE-----HHHHHHH---HHHHHHHHHHH-----------E---------EEEEE------EEEEE-------------------------------------- : Jnet
jhmm            : --EEE------HHHHHHHHHHHHHHH--EEEEEEE--HHHHHHHHHH----------EEE-----EEEEE----------------------EEEEEEE----HHHHHHH---HHHHHHHHHHH-----------EE--------EEEEE------EEEEE---------------------HHHH------------- : jhmm
jpssm           : --EE-------HHHHHHHHHHHHHHH---EEEEEE--HHHHHHHHHHH---------EEEE---HHHHHHHHHHH-----------------EEEEEE------HHHHHH----HHHHHHHHHH----------EE------------EE------EEEEE-------------------------------------- : jpssm

Lupas 14        : -------------cccccccccccccc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---B----B--BBB--B--BB--B---BBBBBBBBBB---BB--BB--BB-B--BBBBBBB--B-BBBBBB-B---------B----B---BBBBBBBBB---B--BB-B---B--B---B--BB-B-B-B---BB-B--------BBBBBB-BB--BBBBBBBB-------B-B---BB-----B---B-B------- : Jnet_25
Jnet_5          : ----------------B------B---B-BBB-B------B---B-----------BB-BB----BB-B----------------------B-BB-B-B-------B-------------B---B---------BB------------B----BB---BBB---B---------------------------------- : Jnet_5
Jnet_0          : -------------------------------BB------------------------B------------------------------------B-B------------------------------------------------------------B--B-------------------------------------- : Jnet_0
Jnet Rel        : 8422078876345899999999987458126764056078999998821678888605771461101111111023678776653334566548887406333305665146711378888873488756652111067777776124432663210344347777765443566533234311116677777777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.