Filename Description -------- ----------- jp_Aqa3Tuu.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_Aqa3Tuu.als Alscript command file. Used to generate PS/PDF outputjp_Aqa3Tuu.blast.gz PSIBLAST output (compressed) jp_Aqa3Tuu.coils.csv The output from coils in CSV format jp_Aqa3Tuu.coilseq.lupas_14 The output from coils using a window length of 14 jp_Aqa3Tuu.coilseq.lupas_21 The output from coils using a window length of 21 jp_Aqa3Tuu.coilseq.lupas_28 The output from coils using a window length of 28 jp_Aqa3Tuu.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_Aqa3Tuu.concise.blc A BLC file of the prediction and alignment jp_Aqa3Tuu.concise.pdf A PDF file of the prediction and alignment jp_Aqa3Tuu.fasta Input query sequence in FASTA format jp_Aqa3Tuu.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_Aqa3Tuu.hmm The HHMer2 profile of the alignment jp_Aqa3Tuu.html A HTML file of the prediction and alignment jp_Aqa3Tuu.input Your raw input jp_Aqa3Tuu.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_Aqa3Tuu.jnet The output from Jnet jp_Aqa3Tuu.profile PSIBLAST profile jp_Aqa3Tuu.pssm PSIBLAST PSSM in a format for Jnet jp_Aqa3Tuu.seq Your sequence jp_Aqa3Tuu.simple.html The brief HTML output of the query sequence and prediction only jp_Aqa3Tuu.svg.html A Jalview generated SVG file with summary of the results.