SILENT_MODE BLOCK_FILE jp_Aqa3Tuu.concise.blc MAX_NSEQ 1055 MAX_INPUT_LEN 1057 OUTPUT_FILE jp_Aqa3Tuu.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 153 1044 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1045 153 1054 H SPACE SUB_CHARS 1 1045 153 1054 E SPACE SUB_CHARS 1 1045 153 1054 - SPACE STRAND 2 1048 7 COLOUR_TEXT_REGION 2 1048 7 1048 51 STRAND 16 1048 20 COLOUR_TEXT_REGION 16 1048 20 1048 51 STRAND 28 1048 32 COLOUR_TEXT_REGION 28 1048 32 1048 51 STRAND 56 1048 60 COLOUR_TEXT_REGION 56 1048 60 1048 51 STRAND 77 1048 82 COLOUR_TEXT_REGION 77 1048 82 1048 51 STRAND 100 1048 103 COLOUR_TEXT_REGION 100 1048 103 1048 51 STRAND 112 1048 115 COLOUR_TEXT_REGION 112 1048 115 1048 51 STRAND 138 1048 143 COLOUR_TEXT_REGION 138 1048 143 1048 51 HELIX 14 1048 15 COLOUR_TEXT_REGION 14 1048 15 1048 50 HELIX 40 1048 49 COLOUR_TEXT_REGION 40 1048 49 1048 50 HELIX 62 1048 70 COLOUR_TEXT_REGION 62 1048 70 1048 50 HELIX 85 1048 93 COLOUR_TEXT_REGION 85 1048 93 1048 50 HELIX 123 1048 134 COLOUR_TEXT_REGION 123 1048 134 1048 50 STRAND 2 1053 7 COLOUR_TEXT_REGION 2 1053 7 1053 51 STRAND 15 1053 20 COLOUR_TEXT_REGION 15 1053 20 1053 51 STRAND 28 1053 32 COLOUR_TEXT_REGION 28 1053 32 1053 51 STRAND 56 1053 60 COLOUR_TEXT_REGION 56 1053 60 1053 51 STRAND 77 1053 82 COLOUR_TEXT_REGION 77 1053 82 1053 51 STRAND 100 1053 102 COLOUR_TEXT_REGION 100 1053 102 1053 51 STRAND 112 1053 115 COLOUR_TEXT_REGION 112 1053 115 1053 51 STRAND 138 1053 143 COLOUR_TEXT_REGION 138 1053 143 1053 51 HELIX 40 1053 48 COLOUR_TEXT_REGION 40 1053 48 1053 50 HELIX 62 1053 69 COLOUR_TEXT_REGION 62 1053 69 1053 50 HELIX 85 1053 93 COLOUR_TEXT_REGION 85 1053 93 1053 50 HELIX 123 1053 134 COLOUR_TEXT_REGION 123 1053 134 1053 50 STRAND 2 1054 7 COLOUR_TEXT_REGION 2 1054 7 1054 51 STRAND 28 1054 32 COLOUR_TEXT_REGION 28 1054 32 1054 51 STRAND 55 1054 60 COLOUR_TEXT_REGION 55 1054 60 1054 51 STRAND 77 1054 82 COLOUR_TEXT_REGION 77 1054 82 1054 51 STRAND 100 1054 103 COLOUR_TEXT_REGION 100 1054 103 1054 51 STRAND 112 1054 115 COLOUR_TEXT_REGION 112 1054 115 1054 51 STRAND 138 1054 143 COLOUR_TEXT_REGION 138 1054 143 1054 51 HELIX 14 1054 20 COLOUR_TEXT_REGION 14 1054 20 1054 50 HELIX 39 1054 49 COLOUR_TEXT_REGION 39 1054 49 1054 50 HELIX 62 1054 70 COLOUR_TEXT_REGION 62 1054 70 1054 50 HELIX 85 1054 93 COLOUR_TEXT_REGION 85 1054 93 1054 50 HELIX 123 1054 134 COLOUR_TEXT_REGION 123 1054 134 1054 50