SILENT_MODE BLOCK_FILE jp_WkPuBJf.concise.blc MAX_NSEQ 888 MAX_INPUT_LEN 890 OUTPUT_FILE jp_WkPuBJf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 155 877 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 878 155 887 H SPACE SUB_CHARS 1 878 155 887 E SPACE SUB_CHARS 1 878 155 887 - SPACE STRAND 4 881 5 COLOUR_TEXT_REGION 4 881 5 881 51 STRAND 9 881 14 COLOUR_TEXT_REGION 9 881 14 881 51 STRAND 20 881 27 COLOUR_TEXT_REGION 20 881 27 881 51 STRAND 88 881 98 COLOUR_TEXT_REGION 88 881 98 881 51 STRAND 124 881 130 COLOUR_TEXT_REGION 124 881 130 881 51 STRAND 144 881 154 COLOUR_TEXT_REGION 144 881 154 881 51 HELIX 39 881 55 COLOUR_TEXT_REGION 39 881 55 881 50 HELIX 71 881 84 COLOUR_TEXT_REGION 71 881 84 881 50 HELIX 106 881 117 COLOUR_TEXT_REGION 106 881 117 881 50 STRAND 3 886 5 COLOUR_TEXT_REGION 3 886 5 886 51 STRAND 10 886 13 COLOUR_TEXT_REGION 10 886 13 886 51 STRAND 20 886 27 COLOUR_TEXT_REGION 20 886 27 886 51 STRAND 88 886 97 COLOUR_TEXT_REGION 88 886 97 886 51 STRAND 124 886 130 COLOUR_TEXT_REGION 124 886 130 886 51 STRAND 144 886 153 COLOUR_TEXT_REGION 144 886 153 886 51 HELIX 39 886 54 COLOUR_TEXT_REGION 39 886 54 886 50 HELIX 71 886 84 COLOUR_TEXT_REGION 71 886 84 886 50 HELIX 106 886 117 COLOUR_TEXT_REGION 106 886 117 886 50 STRAND 4 887 5 COLOUR_TEXT_REGION 4 887 5 887 51 STRAND 8 887 14 COLOUR_TEXT_REGION 8 887 14 887 51 STRAND 20 887 27 COLOUR_TEXT_REGION 20 887 27 887 51 STRAND 88 887 98 COLOUR_TEXT_REGION 88 887 98 887 51 STRAND 124 887 131 COLOUR_TEXT_REGION 124 887 131 887 51 STRAND 144 887 154 COLOUR_TEXT_REGION 144 887 154 887 51 HELIX 41 887 55 COLOUR_TEXT_REGION 41 887 55 887 50 HELIX 71 887 84 COLOUR_TEXT_REGION 71 887 84 887 50 HELIX 105 887 118 COLOUR_TEXT_REGION 105 887 118 887 50