SILENT_MODE
BLOCK_FILE jp_nM1qpRG.concise.blc
MAX_NSEQ 214
MAX_INPUT_LEN 216
OUTPUT_FILE jp_nM1qpRG.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 128 203   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 204 128 213 H SPACE
SUB_CHARS 1 204 128 213 E SPACE
SUB_CHARS 1 204 128 213 - SPACE
STRAND 3 207 7
COLOUR_TEXT_REGION 3 207 7 207 51
STRAND 11 207 13
COLOUR_TEXT_REGION 11 207 13 207 51
STRAND 31 207 36
COLOUR_TEXT_REGION 31 207 36 207 51
STRAND 43 207 48
COLOUR_TEXT_REGION 43 207 48 207 51
STRAND 53 207 55
COLOUR_TEXT_REGION 53 207 55 207 51
STRAND 61 207 66
COLOUR_TEXT_REGION 61 207 66 207 51
STRAND 104 207 107
COLOUR_TEXT_REGION 104 207 107 207 51
HELIX 15 207 26
COLOUR_TEXT_REGION 15 207 26 207 50
HELIX 88 207 97
COLOUR_TEXT_REGION 88 207 97 207 50
HELIX 109 207 125
COLOUR_TEXT_REGION 109 207 125 207 50
STRAND 3 212 7
COLOUR_TEXT_REGION 3 212 7 212 51
STRAND 11 212 13
COLOUR_TEXT_REGION 11 212 13 212 51
STRAND 31 212 36
COLOUR_TEXT_REGION 31 212 36 212 51
STRAND 43 212 48
COLOUR_TEXT_REGION 43 212 48 212 51
STRAND 53 212 54
COLOUR_TEXT_REGION 53 212 54 212 51
STRAND 61 212 66
COLOUR_TEXT_REGION 61 212 66 212 51
STRAND 104 212 107
COLOUR_TEXT_REGION 104 212 107 212 51
HELIX 15 212 26
COLOUR_TEXT_REGION 15 212 26 212 50
HELIX 88 212 97
COLOUR_TEXT_REGION 88 212 97 212 50
HELIX 109 212 124
COLOUR_TEXT_REGION 109 212 124 212 50
STRAND 4 213 7
COLOUR_TEXT_REGION 4 213 7 213 51
STRAND 11 213 13
COLOUR_TEXT_REGION 11 213 13 213 51
STRAND 31 213 36
COLOUR_TEXT_REGION 31 213 36 213 51
STRAND 42 213 48
COLOUR_TEXT_REGION 42 213 48 213 51
STRAND 53 213 56
COLOUR_TEXT_REGION 53 213 56 213 51
STRAND 62 213 66
COLOUR_TEXT_REGION 62 213 66 213 51
STRAND 104 213 107
COLOUR_TEXT_REGION 104 213 107 213 51
HELIX 14 213 26
COLOUR_TEXT_REGION 14 213 26 213 50
HELIX 88 213 97
COLOUR_TEXT_REGION 88 213 97 213 50
HELIX 109 213 126
COLOUR_TEXT_REGION 109 213 126 213 50