SILENT_MODE
BLOCK_FILE jp_qO5ooj6.concise.blc
MAX_NSEQ 925
MAX_INPUT_LEN 927
OUTPUT_FILE jp_qO5ooj6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 93 914   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 915 93 924 H SPACE
SUB_CHARS 1 915 93 924 E SPACE
SUB_CHARS 1 915 93 924 - SPACE
STRAND 28 918 34
COLOUR_TEXT_REGION 28 918 34 918 51
STRAND 38 918 44
COLOUR_TEXT_REGION 38 918 44 918 51
STRAND 48 918 54
COLOUR_TEXT_REGION 48 918 54 918 51
HELIX 4 918 26
COLOUR_TEXT_REGION 4 918 26 918 50
HELIX 56 918 59
COLOUR_TEXT_REGION 56 918 59 918 50
HELIX 62 918 89
COLOUR_TEXT_REGION 62 918 89 918 50
STRAND 28 923 34
COLOUR_TEXT_REGION 28 923 34 923 51
STRAND 38 923 44
COLOUR_TEXT_REGION 38 923 44 923 51
STRAND 48 923 54
COLOUR_TEXT_REGION 48 923 54 923 51
HELIX 4 923 27
COLOUR_TEXT_REGION 4 923 27 923 50
HELIX 56 923 59
COLOUR_TEXT_REGION 56 923 59 923 50
HELIX 62 923 89
COLOUR_TEXT_REGION 62 923 89 923 50
STRAND 29 924 34
COLOUR_TEXT_REGION 29 924 34 924 51
STRAND 38 924 44
COLOUR_TEXT_REGION 38 924 44 924 51
STRAND 47 924 53
COLOUR_TEXT_REGION 47 924 53 924 51
HELIX 4 924 25
COLOUR_TEXT_REGION 4 924 25 924 50
HELIX 58 924 59
COLOUR_TEXT_REGION 58 924 59 924 50
HELIX 62 924 89
COLOUR_TEXT_REGION 62 924 89 924 50